miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23193 5' -62.7 NC_005259.1 + 59457 0.67 0.377502
Target:  5'- cACCggaGAGCuGCCCGgccucgaccgcgUCGGCGAggUGCUCg -3'
miRNA:   3'- cUGG---CUCGcCGGGC------------AGCCGCU--ACGGG- -5'
23193 5' -62.7 NC_005259.1 + 24425 0.67 0.369343
Target:  5'- cGACCG-GCaGGCUCaugauguUCGGC-AUGCCCg -3'
miRNA:   3'- -CUGGCuCG-CCGGGc------AGCCGcUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 5573 0.67 0.369343
Target:  5'- uGCCGAGCaGCCgcUCgGGCGAgacaucgagGCCCa -3'
miRNA:   3'- cUGGCUCGcCGGgcAG-CCGCUa--------CGGG- -5'
23193 5' -62.7 NC_005259.1 + 52376 0.67 0.361307
Target:  5'- gGGCCGAGgcaGGCCaccuaCGGCGAcGCCg -3'
miRNA:   3'- -CUGGCUCg--CCGGgca--GCCGCUaCGGg -5'
23193 5' -62.7 NC_005259.1 + 37834 0.67 0.361307
Target:  5'- uAUCGAGCucGCCCuugagccaGUCGGCGAggaUGCCg -3'
miRNA:   3'- cUGGCUCGc-CGGG--------CAGCCGCU---ACGGg -5'
23193 5' -62.7 NC_005259.1 + 22091 0.67 0.361307
Target:  5'- cGCCGAGCaGUCCG-CGuGCGccgccgagcuUGCCCg -3'
miRNA:   3'- cUGGCUCGcCGGGCaGC-CGCu---------ACGGG- -5'
23193 5' -62.7 NC_005259.1 + 29170 0.67 0.353392
Target:  5'- cAUUGAGCGcGUUgGUCGGCGAcaggaUGCCg -3'
miRNA:   3'- cUGGCUCGC-CGGgCAGCCGCU-----ACGGg -5'
23193 5' -62.7 NC_005259.1 + 10441 0.67 0.353392
Target:  5'- cGGCuCGGGCGGUugggCCGgaucgCGGCGcgGCUg -3'
miRNA:   3'- -CUG-GCUCGCCG----GGCa----GCCGCuaCGGg -5'
23193 5' -62.7 NC_005259.1 + 31742 0.67 0.343288
Target:  5'- cGCCGuugccaggcuugaGGCcGCCCGgcaggacuugcaUGGCGGUGCCCg -3'
miRNA:   3'- cUGGC-------------UCGcCGGGCa-----------GCCGCUACGGG- -5'
23193 5' -62.7 NC_005259.1 + 49788 0.68 0.337934
Target:  5'- gGugCGGGCGGCgacgugggacaCCGagUCGGCGAUgaucgauggccGCCUg -3'
miRNA:   3'- -CugGCUCGCCG-----------GGC--AGCCGCUA-----------CGGG- -5'
23193 5' -62.7 NC_005259.1 + 42166 0.68 0.337934
Target:  5'- uGCCgGGGCGGUCUGcUCGGgcagGAUGCCg -3'
miRNA:   3'- cUGG-CUCGCCGGGC-AGCCg---CUACGGg -5'
23193 5' -62.7 NC_005259.1 + 23368 0.68 0.337934
Target:  5'- gGGCCGGGCaGCgCGcCGGUGccGCCg -3'
miRNA:   3'- -CUGGCUCGcCGgGCaGCCGCuaCGGg -5'
23193 5' -62.7 NC_005259.1 + 8848 0.68 0.337174
Target:  5'- uGGCCGccgccucAGCGGCCUcacgggCGGCGAacgccUGCUCg -3'
miRNA:   3'- -CUGGC-------UCGCCGGGca----GCCGCU-----ACGGG- -5'
23193 5' -62.7 NC_005259.1 + 39600 0.68 0.330392
Target:  5'- cACCGAG-GGCC--UCGGCGA-GCUCg -3'
miRNA:   3'- cUGGCUCgCCGGgcAGCCGCUaCGGG- -5'
23193 5' -62.7 NC_005259.1 + 22169 0.68 0.330392
Target:  5'- uGAgUGAGC-GCCC--CGGCGAgcUGCCCg -3'
miRNA:   3'- -CUgGCUCGcCGGGcaGCCGCU--ACGGG- -5'
23193 5' -62.7 NC_005259.1 + 60642 0.68 0.330392
Target:  5'- uGCCGguaucgcucggcGGCGGCCuCGgcaUCGGCGAgaGCCUc -3'
miRNA:   3'- cUGGC------------UCGCCGG-GC---AGCCGCUa-CGGG- -5'
23193 5' -62.7 NC_005259.1 + 55563 0.68 0.322974
Target:  5'- gGGCCGcgcuaGGCGuGaCCGUCGGCGcgGCgCu -3'
miRNA:   3'- -CUGGC-----UCGC-CgGGCAGCCGCuaCGgG- -5'
23193 5' -62.7 NC_005259.1 + 42645 0.68 0.322974
Target:  5'- gGGCCGAGCuGCgCGUagaugucggUGGCGA-GCCUg -3'
miRNA:   3'- -CUGGCUCGcCGgGCA---------GCCGCUaCGGG- -5'
23193 5' -62.7 NC_005259.1 + 17587 0.68 0.322974
Target:  5'- cGCCGAGgGGCCgGUUgaggucuugGGCGG-GCCa -3'
miRNA:   3'- cUGGCUCgCCGGgCAG---------CCGCUaCGGg -5'
23193 5' -62.7 NC_005259.1 + 19369 0.68 0.308513
Target:  5'- cAUCG-GCGGCagccgCGUCGGCGAUGgCg -3'
miRNA:   3'- cUGGCuCGCCGg----GCAGCCGCUACgGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.