miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23194 5' -59.3 NC_005259.1 + 65137 0.66 0.572828
Target:  5'- cGGCGGccacccccGACAagUCGAaacGGgCCAUGGCCc -3'
miRNA:   3'- cCCGCU--------CUGU--AGCU---CCgGGUACCGGu -5'
23194 5' -59.3 NC_005259.1 + 50860 0.66 0.572828
Target:  5'- -cGCGAGGCAgauugcaaUCGAuGCCgAUGGUCGg -3'
miRNA:   3'- ccCGCUCUGU--------AGCUcCGGgUACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 28009 0.66 0.541773
Target:  5'- gGGGCGGGGuCGcCGGGGUugcgcgCguUGGCCAg -3'
miRNA:   3'- -CCCGCUCU-GUaGCUCCG------GguACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 45207 0.66 0.541773
Target:  5'- cGGGCGAGuucGCGUUGA-GCCCGauGCCc -3'
miRNA:   3'- -CCCGCUC---UGUAGCUcCGGGUacCGGu -5'
23194 5' -59.3 NC_005259.1 + 27464 0.66 0.531542
Target:  5'- -cGCGGGAaAUUGGGGCCggggucggUGUGGCCAc -3'
miRNA:   3'- ccCGCUCUgUAGCUCCGG--------GUACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 23286 0.67 0.501297
Target:  5'- cGGGCGcggugguuGGGUAUCGGGGUCCGgcgcGGUCGg -3'
miRNA:   3'- -CCCGC--------UCUGUAGCUCCGGGUa---CCGGU- -5'
23194 5' -59.3 NC_005259.1 + 58332 0.67 0.481558
Target:  5'- cGGGCagcGAGAUcagGUCGGuGGCCUcgGGCa- -3'
miRNA:   3'- -CCCG---CUCUG---UAGCU-CCGGGuaCCGgu -5'
23194 5' -59.3 NC_005259.1 + 17840 0.67 0.491381
Target:  5'- cGGGUGGGc---CGAGGCCacccCGUGGUCAg -3'
miRNA:   3'- -CCCGCUCuguaGCUCCGG----GUACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 46598 0.67 0.511298
Target:  5'- aGGCGAGcagcGCGUCGuuggcGGUCUugGUGGCCu -3'
miRNA:   3'- cCCGCUC----UGUAGCu----CCGGG--UACCGGu -5'
23194 5' -59.3 NC_005259.1 + 28340 0.67 0.511298
Target:  5'- uGGCGGcGAaAUCGAGGCCaCGgugcUGGCUg -3'
miRNA:   3'- cCCGCU-CUgUAGCUCCGG-GU----ACCGGu -5'
23194 5' -59.3 NC_005259.1 + 21924 0.67 0.511298
Target:  5'- -cGCGAGGCAgUCGAGGCCaucgagucuCAcUGGCgCAa -3'
miRNA:   3'- ccCGCUCUGU-AGCUCCGG---------GU-ACCG-GU- -5'
23194 5' -59.3 NC_005259.1 + 47846 0.67 0.501297
Target:  5'- cGGuGCGAG-CuuuUCGAGcGCCUuguUGGCCu -3'
miRNA:   3'- -CC-CGCUCuGu--AGCUC-CGGGu--ACCGGu -5'
23194 5' -59.3 NC_005259.1 + 60344 0.68 0.462205
Target:  5'- aGGCGGcGAUcagGUCGAGGCCCu--GCCc -3'
miRNA:   3'- cCCGCU-CUG---UAGCUCCGGGuacCGGu -5'
23194 5' -59.3 NC_005259.1 + 57938 0.68 0.462205
Target:  5'- -aGCGAGuugaGCAcCGAGG-CCAUGGCCc -3'
miRNA:   3'- ccCGCUC----UGUaGCUCCgGGUACCGGu -5'
23194 5' -59.3 NC_005259.1 + 61052 0.68 0.448904
Target:  5'- cGGGCGgcucaccuugugccGGGCAUCGGcauaggcgucgucGGCCUcgGGCUu -3'
miRNA:   3'- -CCCGC--------------UCUGUAGCU-------------CCGGGuaCCGGu -5'
23194 5' -59.3 NC_005259.1 + 14957 0.68 0.443269
Target:  5'- aGGGCG--GCAUgGAGGCgCAUucaaGGCCGc -3'
miRNA:   3'- -CCCGCucUGUAgCUCCGgGUA----CCGGU- -5'
23194 5' -59.3 NC_005259.1 + 10611 0.68 0.442333
Target:  5'- -aGCGAGcacacguguggguGCGUCGAGGCCgAacagcuUGGCCu -3'
miRNA:   3'- ccCGCUC-------------UGUAGCUCCGGgU------ACCGGu -5'
23194 5' -59.3 NC_005259.1 + 58937 0.68 0.433966
Target:  5'- cGGGCGcgguGGCAgCGucGGCCU-UGGCCAg -3'
miRNA:   3'- -CCCGCu---CUGUaGCu-CCGGGuACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 53016 0.68 0.433966
Target:  5'- uGGGCGcugcgguGGCGUCGAGGCaUCGUGaCCu -3'
miRNA:   3'- -CCCGCu------CUGUAGCUCCG-GGUACcGGu -5'
23194 5' -59.3 NC_005259.1 + 51436 0.68 0.424777
Target:  5'- uGGGCGGGcCA-CGGGGCCUcgcGCCGa -3'
miRNA:   3'- -CCCGCUCuGUaGCUCCGGGuacCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.