miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23194 5' -59.3 NC_005259.1 + 8753 0.72 0.267627
Target:  5'- -cGuCGAGG--UCGAGGCCCuUGGCCAg -3'
miRNA:   3'- ccC-GCUCUguAGCUCCGGGuACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 10611 0.68 0.442333
Target:  5'- -aGCGAGcacacguguggguGCGUCGAGGCCgAacagcuUGGCCu -3'
miRNA:   3'- ccCGCUC-------------UGUAGCUCCGGgU------ACCGGu -5'
23194 5' -59.3 NC_005259.1 + 10772 0.75 0.174034
Target:  5'- cGGGCGGGuCAUCGAGGUg---GGCCGc -3'
miRNA:   3'- -CCCGCUCuGUAGCUCCGgguaCCGGU- -5'
23194 5' -59.3 NC_005259.1 + 14957 0.68 0.443269
Target:  5'- aGGGCG--GCAUgGAGGCgCAUucaaGGCCGc -3'
miRNA:   3'- -CCCGCucUGUAgCUCCGgGUA----CCGGU- -5'
23194 5' -59.3 NC_005259.1 + 15016 0.7 0.337317
Target:  5'- aGGGCauGGACAUCGAcaguccgaucuaccGGCagggugCCAUGGCCGa -3'
miRNA:   3'- -CCCGc-UCUGUAGCU--------------CCG------GGUACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 17840 0.67 0.491381
Target:  5'- cGGGUGGGc---CGAGGCCacccCGUGGUCAg -3'
miRNA:   3'- -CCCGCUCuguaGCUCCGG----GUACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 21924 0.67 0.511298
Target:  5'- -cGCGAGGCAgUCGAGGCCaucgagucuCAcUGGCgCAa -3'
miRNA:   3'- ccCGCUCUGU-AGCUCCGG---------GU-ACCG-GU- -5'
23194 5' -59.3 NC_005259.1 + 23286 0.67 0.501297
Target:  5'- cGGGCGcggugguuGGGUAUCGGGGUCCGgcgcGGUCGg -3'
miRNA:   3'- -CCCGC--------UCUGUAGCUCCGGGUa---CCGGU- -5'
23194 5' -59.3 NC_005259.1 + 27464 0.66 0.531542
Target:  5'- -cGCGGGAaAUUGGGGCCggggucggUGUGGCCAc -3'
miRNA:   3'- ccCGCUCUgUAGCUCCGG--------GUACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 28009 0.66 0.541773
Target:  5'- gGGGCGGGGuCGcCGGGGUugcgcgCguUGGCCAg -3'
miRNA:   3'- -CCCGCUCU-GUaGCUCCG------GguACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 28340 0.67 0.511298
Target:  5'- uGGCGGcGAaAUCGAGGCCaCGgugcUGGCUg -3'
miRNA:   3'- cCCGCU-CUgUAGCUCCGG-GU----ACCGGu -5'
23194 5' -59.3 NC_005259.1 + 28974 0.7 0.316669
Target:  5'- cGGuGcCGAGGCcgCGAGcGCCCGcuacGGCCAc -3'
miRNA:   3'- -CC-C-GCUCUGuaGCUC-CGGGUa---CCGGU- -5'
23194 5' -59.3 NC_005259.1 + 35983 0.69 0.406754
Target:  5'- cGGCGGGAaaccgacggCGAGGCCgGacugcaccgaggUGGCCAg -3'
miRNA:   3'- cCCGCUCUgua------GCUCCGGgU------------ACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 44266 0.74 0.203188
Target:  5'- cGGCGA--CAUCGAGGCCgAacgccuUGGCCAg -3'
miRNA:   3'- cCCGCUcuGUAGCUCCGGgU------ACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 45207 0.66 0.541773
Target:  5'- cGGGCGAGuucGCGUUGA-GCCCGauGCCc -3'
miRNA:   3'- -CCCGCUC---UGUAGCUcCGGGUacCGGu -5'
23194 5' -59.3 NC_005259.1 + 46598 0.67 0.511298
Target:  5'- aGGCGAGcagcGCGUCGuuggcGGUCUugGUGGCCu -3'
miRNA:   3'- cCCGCUC----UGUAGCu----CCGGG--UACCGGu -5'
23194 5' -59.3 NC_005259.1 + 47846 0.67 0.501297
Target:  5'- cGGuGCGAG-CuuuUCGAGcGCCUuguUGGCCu -3'
miRNA:   3'- -CC-CGCUCuGu--AGCUC-CGGGu--ACCGGu -5'
23194 5' -59.3 NC_005259.1 + 50860 0.66 0.572828
Target:  5'- -cGCGAGGCAgauugcaaUCGAuGCCgAUGGUCGg -3'
miRNA:   3'- ccCGCUCUGU--------AGCUcCGGgUACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 51436 0.68 0.424777
Target:  5'- uGGGCGGGcCA-CGGGGCCUcgcGCCGa -3'
miRNA:   3'- -CCCGCUCuGUaGCUCCGGGuacCGGU- -5'
23194 5' -59.3 NC_005259.1 + 53016 0.68 0.433966
Target:  5'- uGGGCGcugcgguGGCGUCGAGGCaUCGUGaCCu -3'
miRNA:   3'- -CCCGCu------CUGUAGCUCCG-GGUACcGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.