miRNA display CGI


Results 21 - 31 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23194 5' -59.3 NC_005259.1 + 60396 0.68 0.414805
Target:  5'- cGGCGAGGCGaggcccaucUCGAucugcucggggguGGCCCAcggggcGGCCAc -3'
miRNA:   3'- cCCGCUCUGU---------AGCU-------------CCGGGUa-----CCGGU- -5'
23194 5' -59.3 NC_005259.1 + 53613 0.69 0.406754
Target:  5'- gGGGUcagcAGGCGUCGAGcgguGCCguUGGCCGc -3'
miRNA:   3'- -CCCGc---UCUGUAGCUC----CGGguACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 35983 0.69 0.406754
Target:  5'- cGGCGGGAaaccgacggCGAGGCCgGacugcaccgaggUGGCCAg -3'
miRNA:   3'- cCCGCUCUgua------GCUCCGGgU------------ACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 15016 0.7 0.337317
Target:  5'- aGGGCauGGACAUCGAcaguccgaucuaccGGCagggugCCAUGGCCGa -3'
miRNA:   3'- -CCCGc-UCUGUAGCU--------------CCG------GGUACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 56091 0.7 0.324204
Target:  5'- cGGUGcu-CGUCGGGGCCaccgCGUGGCCAc -3'
miRNA:   3'- cCCGCucuGUAGCUCCGG----GUACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 28974 0.7 0.316669
Target:  5'- cGGuGcCGAGGCcgCGAGcGCCCGcuacGGCCAc -3'
miRNA:   3'- -CC-C-GCUCUGuaGCUC-CGGGUa---CCGGU- -5'
23194 5' -59.3 NC_005259.1 + 8753 0.72 0.267627
Target:  5'- -cGuCGAGG--UCGAGGCCCuUGGCCAg -3'
miRNA:   3'- ccC-GCUCUguAGCUCCGGGuACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 54689 0.73 0.21381
Target:  5'- -aGCGAGACcguGUCGAGGCggGUGGCCu -3'
miRNA:   3'- ccCGCUCUG---UAGCUCCGggUACCGGu -5'
23194 5' -59.3 NC_005259.1 + 44266 0.74 0.203188
Target:  5'- cGGCGA--CAUCGAGGCCgAacgccuUGGCCAg -3'
miRNA:   3'- cCCGCUcuGUAGCUCCGGgU------ACCGGU- -5'
23194 5' -59.3 NC_005259.1 + 10772 0.75 0.174034
Target:  5'- cGGGCGGGuCAUCGAGGUg---GGCCGc -3'
miRNA:   3'- -CCCGCUCuGUAGCUCCGgguaCCGGU- -5'
23194 5' -59.3 NC_005259.1 + 63442 1.1 0.000423
Target:  5'- cGGGCGAGACAUCGAGGCCCAUGGCCAa -3'
miRNA:   3'- -CCCGCUCUGUAGCUCCGGGUACCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.