Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23196 | 3' | -60.9 | NC_005259.1 | + | 33112 | 0.68 | 0.361814 |
Target: 5'- gUGCCUGUagGGCCacGCGGCAgCCGc- -3' miRNA: 3'- gGCGGACGagCUGG--UGCCGUgGGCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 8356 | 0.68 | 0.353758 |
Target: 5'- gCUGCCgguaucGCUCGGCgGCGGC-CUCGg- -3' miRNA: 3'- -GGCGGa-----CGAGCUGgUGCCGuGGGCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 46564 | 0.69 | 0.308115 |
Target: 5'- gCGCCUauggucgcgGCgUCGACCGCGcCGCCCGa- -3' miRNA: 3'- gGCGGA---------CG-AGCUGGUGCcGUGGGCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 12509 | 0.69 | 0.308115 |
Target: 5'- -aGCC-GCUgGGCCGCucGGCuACCCGUAg -3' miRNA: 3'- ggCGGaCGAgCUGGUG--CCG-UGGGCAU- -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 40850 | 0.7 | 0.293933 |
Target: 5'- aUGcCCUGCgccUCGACCAUGGcCGCCCa-- -3' miRNA: 3'- gGC-GGACG---AGCUGGUGCC-GUGGGcau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 36703 | 0.7 | 0.289779 |
Target: 5'- cCCGCCgaugagcucgugccGCUCGAcCCGCcGCGCCCGc- -3' miRNA: 3'- -GGCGGa-------------CGAGCU-GGUGcCGUGGGCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 43268 | 0.7 | 0.273624 |
Target: 5'- gUGCCUGagagUUGACCGCaGCGCCCGc- -3' miRNA: 3'- gGCGGACg---AGCUGGUGcCGUGGGCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 6935 | 0.7 | 0.273624 |
Target: 5'- gCCGCCUugaggccgaGCUCGccGCCgACGGCAUCCa-- -3' miRNA: 3'- -GGCGGA---------CGAGC--UGG-UGCCGUGGGcau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 45681 | 0.71 | 0.248315 |
Target: 5'- aCCGCCUGCUCaGGCCcuuACGGaACCgCGa- -3' miRNA: 3'- -GGCGGACGAG-CUGG---UGCCgUGG-GCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 15312 | 0.72 | 0.198441 |
Target: 5'- gCCGCCcacgGuCUCGACgGCGGUACUgGUAa -3' miRNA: 3'- -GGCGGa---C-GAGCUGgUGCCGUGGgCAU- -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 60185 | 0.73 | 0.188615 |
Target: 5'- aCGCCUGCUCGACCGacCGG-GCCaCGa- -3' miRNA: 3'- gGCGGACGAGCUGGU--GCCgUGG-GCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 43842 | 0.74 | 0.145678 |
Target: 5'- gCCGCC-GCUCG-CCAUGccgagcGCACCCGUGa -3' miRNA: 3'- -GGCGGaCGAGCuGGUGC------CGUGGGCAU- -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 49670 | 0.75 | 0.131145 |
Target: 5'- gCGCCUGCUCGGCCugGuagucggccucGCGCUCGc- -3' miRNA: 3'- gGCGGACGAGCUGGugC-----------CGUGGGCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 62402 | 1.08 | 0.0005 |
Target: 5'- cCCGCCUGCUCGACCACGGCACCCGUAu -3' miRNA: 3'- -GGCGGACGAGCUGGUGCCGUGGGCAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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