Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23196 | 3' | -60.9 | NC_005259.1 | + | 44087 | 0.66 | 0.455647 |
Target: 5'- gCUGaCCUGCUCGAUCACGucgaccaucugcucGCgcaucGCCUGUAg -3' miRNA: 3'- -GGC-GGACGAGCUGGUGC--------------CG-----UGGGCAU- -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 45340 | 0.67 | 0.439856 |
Target: 5'- -gGCCUGCgCcGCCugGGCcGCCgCGUAg -3' miRNA: 3'- ggCGGACGaGcUGGugCCG-UGG-GCAU- -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 45681 | 0.71 | 0.248315 |
Target: 5'- aCCGCCUGCUCaGGCCcuuACGGaACCgCGa- -3' miRNA: 3'- -GGCGGACGAG-CUGG---UGCCgUGG-GCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 46300 | 0.68 | 0.38674 |
Target: 5'- gCCGCCgugGCUgCGuuguUCGCGGC-CCCGa- -3' miRNA: 3'- -GGCGGa--CGA-GCu---GGUGCCGuGGGCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 46564 | 0.69 | 0.308115 |
Target: 5'- gCGCCUauggucgcgGCgUCGACCGCGcCGCCCGa- -3' miRNA: 3'- gGCGGA---------CG-AGCUGGUGCcGUGGGCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 46805 | 0.67 | 0.430715 |
Target: 5'- -aGCCUGCgagCGcACCAcCGGCcACCUGa- -3' miRNA: 3'- ggCGGACGa--GC-UGGU-GCCG-UGGGCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 49670 | 0.75 | 0.131145 |
Target: 5'- gCGCCUGCUCGGCCugGuagucggccucGCGCUCGc- -3' miRNA: 3'- gGCGGACGAGCUGGugC-----------CGUGGGCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 49767 | 0.66 | 0.506723 |
Target: 5'- gCCGUCUGCguugaaugUGGCCAUGGUugguuuccuCCCGa- -3' miRNA: 3'- -GGCGGACGa-------GCUGGUGCCGu--------GGGCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 55361 | 0.66 | 0.496889 |
Target: 5'- aCGCCUGa---GCgACGGCAgCCGUGa -3' miRNA: 3'- gGCGGACgagcUGgUGCCGUgGGCAU- -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 60185 | 0.73 | 0.188615 |
Target: 5'- aCGCCUGCUCGACCGacCGG-GCCaCGa- -3' miRNA: 3'- gGCGGACGAGCUGGU--GCCgUGG-GCau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 62402 | 1.08 | 0.0005 |
Target: 5'- cCCGCCUGCUCGACCACGGCACCCGUAu -3' miRNA: 3'- -GGCGGACGAGCUGGUGCCGUGGGCAU- -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 63588 | 0.66 | 0.477486 |
Target: 5'- gCCGCCUGgcuguuCUCGuccuCCAUGGCGgCCa-- -3' miRNA: 3'- -GGCGGAC------GAGCu---GGUGCCGUgGGcau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 68616 | 0.67 | 0.449108 |
Target: 5'- aCCGCUUGUU-GGCCAgccgGGCACCCu-- -3' miRNA: 3'- -GGCGGACGAgCUGGUg---CCGUGGGcau -5' |
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23196 | 3' | -60.9 | NC_005259.1 | + | 68739 | 0.68 | 0.395296 |
Target: 5'- gCCGCUUgccgaGCUCGACCcCGGCgACCuCGc- -3' miRNA: 3'- -GGCGGA-----CGAGCUGGuGCCG-UGG-GCau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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