miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23197 5' -52.8 NC_005259.1 + 62173 1.09 0.003
Target:  5'- gUGCGCGAUCUCGACACGUUCGUCACGc -3'
miRNA:   3'- -ACGCGCUAGAGCUGUGCAAGCAGUGC- -5'
23197 5' -52.8 NC_005259.1 + 26647 0.76 0.385721
Target:  5'- gGCGUGcgCUCGGCAgGUUCGgCGCa -3'
miRNA:   3'- aCGCGCuaGAGCUGUgCAAGCaGUGc -5'
23197 5' -52.8 NC_005259.1 + 14377 0.76 0.398251
Target:  5'- cGC-UGAUCUcgucaccgagcucgcCGACACGUUCGUCACa -3'
miRNA:   3'- aCGcGCUAGA---------------GCUGUGCAAGCAGUGc -5'
23197 5' -52.8 NC_005259.1 + 51512 0.75 0.4412
Target:  5'- cGC-CGAUCUCGACGCGcgugaccUCGUgCACGg -3'
miRNA:   3'- aCGcGCUAGAGCUGUGCa------AGCA-GUGC- -5'
23197 5' -52.8 NC_005259.1 + 57020 0.75 0.460676
Target:  5'- aGCGCGG-CUCGGCGCGgugggGUCGCa -3'
miRNA:   3'- aCGCGCUaGAGCUGUGCaag--CAGUGc -5'
23197 5' -52.8 NC_005259.1 + 34597 0.74 0.490714
Target:  5'- cGCGCGGUgUCGACAUcacUCGUcCGCGa -3'
miRNA:   3'- aCGCGCUAgAGCUGUGca-AGCA-GUGC- -5'
23197 5' -52.8 NC_005259.1 + 24308 0.72 0.607132
Target:  5'- cUGCGCGAUCUaccCGACAUGgucCGgccUCACGc -3'
miRNA:   3'- -ACGCGCUAGA---GCUGUGCaa-GC---AGUGC- -5'
23197 5' -52.8 NC_005259.1 + 300 0.71 0.628881
Target:  5'- cGCGCuGAUCUCGAC-CGggggugCGUC-CGg -3'
miRNA:   3'- aCGCG-CUAGAGCUGuGCaa----GCAGuGC- -5'
23197 5' -52.8 NC_005259.1 + 20619 0.71 0.65064
Target:  5'- -cCGCGAccgUgUCGAUGCGUUCGUuCGCGa -3'
miRNA:   3'- acGCGCU---AgAGCUGUGCAAGCA-GUGC- -5'
23197 5' -52.8 NC_005259.1 + 38852 0.69 0.746528
Target:  5'- aGCGCGuUCUCGA--UGUUCGaCGCGc -3'
miRNA:   3'- aCGCGCuAGAGCUguGCAAGCaGUGC- -5'
23197 5' -52.8 NC_005259.1 + 67891 0.69 0.773868
Target:  5'- cGCGCaucguucggcugugGGUCUCGGCgaggucaagcGCGUagGUCGCGa -3'
miRNA:   3'- aCGCG--------------CUAGAGCUG----------UGCAagCAGUGC- -5'
23197 5' -52.8 NC_005259.1 + 4319 0.67 0.858787
Target:  5'- aGCGCGAccaacCUCGuGC-CGgaccUCGUCGCGg -3'
miRNA:   3'- aCGCGCUa----GAGC-UGuGCa---AGCAGUGC- -5'
23197 5' -52.8 NC_005259.1 + 31835 0.67 0.866848
Target:  5'- cGCGuCGAUCUUcucGCGCGUgaccgCGUCAUu -3'
miRNA:   3'- aCGC-GCUAGAGc--UGUGCAa----GCAGUGc -5'
23197 5' -52.8 NC_005259.1 + 58168 0.67 0.882248
Target:  5'- gGCGCacggGAUCUCGACGCa--CGUCuuGa -3'
miRNA:   3'- aCGCG----CUAGAGCUGUGcaaGCAGugC- -5'
23197 5' -52.8 NC_005259.1 + 39445 0.66 0.889573
Target:  5'- aGCGUGAUCg-GACcggagaaaacugGCGagccgUCGUCGCGg -3'
miRNA:   3'- aCGCGCUAGagCUG------------UGCa----AGCAGUGC- -5'
23197 5' -52.8 NC_005259.1 + 51665 0.66 0.889573
Target:  5'- cGCGCGGgcgCgUCgGGCACGggCG-CGCGa -3'
miRNA:   3'- aCGCGCUa--G-AG-CUGUGCaaGCaGUGC- -5'
23197 5' -52.8 NC_005259.1 + 51998 0.66 0.889573
Target:  5'- cGC-CGAUCUCGAC-CGgaUG-CACGa -3'
miRNA:   3'- aCGcGCUAGAGCUGuGCaaGCaGUGC- -5'
23197 5' -52.8 NC_005259.1 + 4185 0.66 0.907411
Target:  5'- cUGCGCGAgaccaaccgcaagCUCGACACGcUCaUCGa- -3'
miRNA:   3'- -ACGCGCUa------------GAGCUGUGCaAGcAGUgc -5'
23197 5' -52.8 NC_005259.1 + 53169 0.66 0.909997
Target:  5'- gGC-CGAUCUCGcCACcgccgccCGUCGCGg -3'
miRNA:   3'- aCGcGCUAGAGCuGUGcaa----GCAGUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.