miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23198 5' -54.1 NC_005259.1 + 50395 0.65 0.847088
Target:  5'- uGUCGCGGcUCGCcgagcgcgccgguGCCUUGaccggcUCGGGCAGc -3'
miRNA:   3'- -CAGCGCUaGGUG-------------UGGAAC------AGCUCGUC- -5'
23198 5' -54.1 NC_005259.1 + 10733 0.66 0.815878
Target:  5'- uGUCgGUGAUcaCCGCGCgCUgccgggcgaucaucaUGUCGGGCGGg -3'
miRNA:   3'- -CAG-CGCUA--GGUGUG-GA---------------ACAGCUCGUC- -5'
23198 5' -54.1 NC_005259.1 + 49572 0.66 0.802716
Target:  5'- gGUCGUGG-CCAgACCgg--CGGGCGGg -3'
miRNA:   3'- -CAGCGCUaGGUgUGGaacaGCUCGUC- -5'
23198 5' -54.1 NC_005259.1 + 7227 0.66 0.802716
Target:  5'- -gCGUGAUgaacgacggcagCCGCGCCggUGUCGAGUg- -3'
miRNA:   3'- caGCGCUA------------GGUGUGGa-ACAGCUCGuc -5'
23198 5' -54.1 NC_005259.1 + 37826 0.67 0.783321
Target:  5'- cUCGaccuCGggCCACACCUgcGUCGAGCc- -3'
miRNA:   3'- cAGC----GCuaGGUGUGGAa-CAGCUCGuc -5'
23198 5' -54.1 NC_005259.1 + 3998 0.67 0.783321
Target:  5'- aUgGCGggCCGCGuCCcccgGUUGAGCAGa -3'
miRNA:   3'- cAgCGCuaGGUGU-GGaa--CAGCUCGUC- -5'
23198 5' -54.1 NC_005259.1 + 33588 0.67 0.783321
Target:  5'- cGUCGCGggCCACcgagGCgcgGUCGAGCu- -3'
miRNA:   3'- -CAGCGCuaGGUG----UGgaaCAGCUCGuc -5'
23198 5' -54.1 NC_005259.1 + 30794 0.67 0.783321
Target:  5'- uUCGCGuaccgCCggaACACCUgaGUCGGGUAGu -3'
miRNA:   3'- cAGCGCua---GG---UGUGGAa-CAGCUCGUC- -5'
23198 5' -54.1 NC_005259.1 + 43713 0.67 0.763304
Target:  5'- -gCGCGA-CCGCAUCgaGUCGAugGCGGc -3'
miRNA:   3'- caGCGCUaGGUGUGGaaCAGCU--CGUC- -5'
23198 5' -54.1 NC_005259.1 + 51618 0.67 0.753091
Target:  5'- cUCGcCGGUCCACACgagGUCgucgGAGCGGu -3'
miRNA:   3'- cAGC-GCUAGGUGUGgaaCAG----CUCGUC- -5'
23198 5' -54.1 NC_005259.1 + 17749 0.67 0.752062
Target:  5'- -aCGCGAUCCgugaggccgccgcGCGCCggGcCGAGCGc -3'
miRNA:   3'- caGCGCUAGG-------------UGUGGaaCaGCUCGUc -5'
23198 5' -54.1 NC_005259.1 + 1938 0.68 0.732309
Target:  5'- -cCGaCGGUCCACACCggcgUGAGCGu -3'
miRNA:   3'- caGC-GCUAGGUGUGGaacaGCUCGUc -5'
23198 5' -54.1 NC_005259.1 + 35605 0.68 0.721763
Target:  5'- -gUGCGuccuggCCACGCUgcGUCGAGUAGu -3'
miRNA:   3'- caGCGCua----GGUGUGGaaCAGCUCGUC- -5'
23198 5' -54.1 NC_005259.1 + 46572 0.69 0.667938
Target:  5'- gGUCGCGGcgucgaCCGCGCCgcccgaggCGAGCAGc -3'
miRNA:   3'- -CAGCGCUa-----GGUGUGGaaca----GCUCGUC- -5'
23198 5' -54.1 NC_005259.1 + 36219 0.69 0.6461
Target:  5'- -gCGCGAUgCCgaGCACCUUGgccagcgCGAGCGc -3'
miRNA:   3'- caGCGCUA-GG--UGUGGAACa------GCUCGUc -5'
23198 5' -54.1 NC_005259.1 + 1579 0.69 0.635157
Target:  5'- -gCGCGccCCACACCgagGUCGAGguCAGg -3'
miRNA:   3'- caGCGCuaGGUGUGGaa-CAGCUC--GUC- -5'
23198 5' -54.1 NC_005259.1 + 16685 0.71 0.527059
Target:  5'- gGUCgGCGAUCCuggGCACCgagGUgaccgcCGAGCAGg -3'
miRNA:   3'- -CAG-CGCUAGG---UGUGGaa-CA------GCUCGUC- -5'
23198 5' -54.1 NC_005259.1 + 66112 0.72 0.50615
Target:  5'- -gCGCGAcuUCUACGCgc-GUCGAGCAGg -3'
miRNA:   3'- caGCGCU--AGGUGUGgaaCAGCUCGUC- -5'
23198 5' -54.1 NC_005259.1 + 26129 0.72 0.47548
Target:  5'- gGUCGcCGGUCCgACGCCgccgagGcCGAGCAGc -3'
miRNA:   3'- -CAGC-GCUAGG-UGUGGaa----CaGCUCGUC- -5'
23198 5' -54.1 NC_005259.1 + 9417 0.79 0.183059
Target:  5'- --gGUGcgCCACACCgUUGUCGAGCAGc -3'
miRNA:   3'- cagCGCuaGGUGUGG-AACAGCUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.