miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23199 3' -53.2 NC_005259.1 + 61518 1.14 0.001327
Target:  5'- uGCCGGUCGACCUCGUCGGGAAUUUCCu -3'
miRNA:   3'- -CGGCCAGCUGGAGCAGCCCUUAAAGG- -5'
23199 3' -53.2 NC_005259.1 + 39361 0.82 0.179237
Target:  5'- uGCCGG---GCCUCGUCGGGAAcgUCCc -3'
miRNA:   3'- -CGGCCagcUGGAGCAGCCCUUaaAGG- -5'
23199 3' -53.2 NC_005259.1 + 64170 0.75 0.432301
Target:  5'- aGUCGG-CGACUgucugugCGUCGGGAucUUCCu -3'
miRNA:   3'- -CGGCCaGCUGGa------GCAGCCCUuaAAGG- -5'
23199 3' -53.2 NC_005259.1 + 34715 0.72 0.584388
Target:  5'- uGCCGcG-CGagcGCCUCGUCGGGGAaa-CCg -3'
miRNA:   3'- -CGGC-CaGC---UGGAGCAGCCCUUaaaGG- -5'
23199 3' -53.2 NC_005259.1 + 49292 0.72 0.605801
Target:  5'- cGUCGuaGUCGACaUCGUCGGGG---UCCa -3'
miRNA:   3'- -CGGC--CAGCUGgAGCAGCCCUuaaAGG- -5'
23199 3' -53.2 NC_005259.1 + 10941 0.72 0.616545
Target:  5'- cUCGGugUCGACCUCGUCGGuGucggUCUg -3'
miRNA:   3'- cGGCC--AGCUGGAGCAGCC-CuuaaAGG- -5'
23199 3' -53.2 NC_005259.1 + 9724 0.71 0.627301
Target:  5'- gGCCGGUCGAgCUCGcCGaug--UUCCg -3'
miRNA:   3'- -CGGCCAGCUgGAGCaGCccuuaAAGG- -5'
23199 3' -53.2 NC_005259.1 + 47697 0.71 0.647742
Target:  5'- cCCGGUUGgaugcgcggcaguGCCUUGUCGGcGAAcgUCCc -3'
miRNA:   3'- cGGCCAGC-------------UGGAGCAGCC-CUUaaAGG- -5'
23199 3' -53.2 NC_005259.1 + 36444 0.7 0.702177
Target:  5'- cGCCgaGGUCGACCgCGUCGaGGGugagcaCCg -3'
miRNA:   3'- -CGG--CCAGCUGGaGCAGC-CCUuaaa--GG- -5'
23199 3' -53.2 NC_005259.1 + 45442 0.69 0.7539
Target:  5'- gGCCGGaucUCGGuCCUUGaUCGGGGug--CCg -3'
miRNA:   3'- -CGGCC---AGCU-GGAGC-AGCCCUuaaaGG- -5'
23199 3' -53.2 NC_005259.1 + 31076 0.69 0.7539
Target:  5'- gGUCGG-CGAgguucCCgagcgCGUCGGGGAUcagUCCg -3'
miRNA:   3'- -CGGCCaGCU-----GGa----GCAGCCCUUAa--AGG- -5'
23199 3' -53.2 NC_005259.1 + 60282 0.69 0.763931
Target:  5'- uGCCGGgCGGCCaUCGUCGucGGUgcggCCa -3'
miRNA:   3'- -CGGCCaGCUGG-AGCAGCccUUAaa--GG- -5'
23199 3' -53.2 NC_005259.1 + 58788 0.69 0.763931
Target:  5'- cGCCGGUCGaggcggugauuGCCUCGgCGGGcucgcgCUg -3'
miRNA:   3'- -CGGCCAGC-----------UGGAGCaGCCCuuaaa-GG- -5'
23199 3' -53.2 NC_005259.1 + 59786 0.69 0.763931
Target:  5'- aGgUGGUCGAUCUCGuaacccUCGGGuaucggUCCu -3'
miRNA:   3'- -CgGCCAGCUGGAGC------AGCCCuuaa--AGG- -5'
23199 3' -53.2 NC_005259.1 + 64215 0.69 0.773834
Target:  5'- cGCCGGUCGGCagccCGguaUCGGGGucgauagCCg -3'
miRNA:   3'- -CGGCCAGCUGga--GC---AGCCCUuaaa---GG- -5'
23199 3' -53.2 NC_005259.1 + 41267 0.69 0.773834
Target:  5'- cCCGGUCGAgcacCCUCGUCGGcgcacUCa -3'
miRNA:   3'- cGGCCAGCU----GGAGCAGCCcuuaaAGg -5'
23199 3' -53.2 NC_005259.1 + 63869 0.69 0.783596
Target:  5'- gGCCGGcUGGCCUUGcgUGGGcGUggaUUCCa -3'
miRNA:   3'- -CGGCCaGCUGGAGCa-GCCCuUA---AAGG- -5'
23199 3' -53.2 NC_005259.1 + 41315 0.68 0.793208
Target:  5'- cGCgaGGUCGACCUCGaaaaGGGcggugCCg -3'
miRNA:   3'- -CGg-CCAGCUGGAGCag--CCCuuaaaGG- -5'
23199 3' -53.2 NC_005259.1 + 67430 0.68 0.81194
Target:  5'- uGCCGGgcucacgcUUGAgCgCGUCGGGGAUgcCCu -3'
miRNA:   3'- -CGGCC--------AGCUgGaGCAGCCCUUAaaGG- -5'
23199 3' -53.2 NC_005259.1 + 8358 0.68 0.829951
Target:  5'- uGCCGGUaucgcucggcggCGGCCUCGgcaUCGGcGAGag-CCu -3'
miRNA:   3'- -CGGCCA------------GCUGGAGC---AGCC-CUUaaaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.