miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23199 5' -57.4 NC_005259.1 + 67956 0.71 0.391555
Target:  5'- uGCGGGuuGUGCUGuaGCGCGcGCAgCGGCGu -3'
miRNA:   3'- -CGCUCu-UACGGC--UGUGC-CGUgGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 67218 0.68 0.525509
Target:  5'- gGCGGGGucgAUGCCGAcCACGGCGgUGuaGg -3'
miRNA:   3'- -CGCUCU---UACGGCU-GUGCCGUgGCcgU- -5'
23199 5' -57.4 NC_005259.1 + 63659 0.73 0.303166
Target:  5'- gGCcGGGAcGCCgGACACcucgGGCACCGGCGc -3'
miRNA:   3'- -CGcUCUUaCGG-CUGUG----CCGUGGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 62720 0.66 0.683846
Target:  5'- gGCGGGGGaucucGCuCGAC-CGG-ACCGGCGg -3'
miRNA:   3'- -CGCUCUUa----CG-GCUGuGCCgUGGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 61553 1.1 0.00071
Target:  5'- gGCGAGAAUGCCGACACGGCACCGGCAg -3'
miRNA:   3'- -CGCUCUUACGGCUGUGCCGUGGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 59402 0.68 0.525509
Target:  5'- cGCGAGcGUGaCCucgcGCAUGGCGUCGGCGg -3'
miRNA:   3'- -CGCUCuUAC-GGc---UGUGCCGUGGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 59291 0.68 0.525509
Target:  5'- uGUGcAGAccuacgcUGUCGugGCGGCAgCGGCGa -3'
miRNA:   3'- -CGC-UCUu------ACGGCugUGCCGUgGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 58727 0.81 0.093366
Target:  5'- cCGGGggUGUCGuugGCAcCGGCACCGGCGa -3'
miRNA:   3'- cGCUCuuACGGC---UGU-GCCGUGGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 57446 0.68 0.522436
Target:  5'- gGCGAGGuugGUG-CGACGCugcggcaggccgguGGCACCGGaCAc -3'
miRNA:   3'- -CGCUCU---UACgGCUGUG--------------CCGUGGCC-GU- -5'
23199 5' -57.4 NC_005259.1 + 57297 0.68 0.56706
Target:  5'- uCGu-AGUGCaCGACAuCGaGCACCGGCGg -3'
miRNA:   3'- cGCucUUACG-GCUGU-GC-CGUGGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 54689 0.66 0.662662
Target:  5'- aGCGAGAccGUGUCGAgGCGGguggccucaGCCuGGUAc -3'
miRNA:   3'- -CGCUCU--UACGGCUgUGCCg--------UGG-CCGU- -5'
23199 5' -57.4 NC_005259.1 + 52558 0.68 0.534766
Target:  5'- uGCGAGc---CCGACAUGGUcgaccggACCGGCc -3'
miRNA:   3'- -CGCUCuuacGGCUGUGCCG-------UGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 51334 0.78 0.14201
Target:  5'- aCGAGGAUGCCGGugaGCucggauaugcccgguGGCACCGGCAc -3'
miRNA:   3'- cGCUCUUACGGCUg--UG---------------CCGUGGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 50678 0.66 0.641371
Target:  5'- cGCGucGGUGCCGACGaGGCGCU-GCu -3'
miRNA:   3'- -CGCucUUACGGCUGUgCCGUGGcCGu -5'
23199 5' -57.4 NC_005259.1 + 49351 0.66 0.694373
Target:  5'- gGCGAGAgGUGCCG-CGCGaugaagagGCCGGUg -3'
miRNA:   3'- -CGCUCU-UACGGCuGUGCcg------UGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 47009 0.66 0.694373
Target:  5'- cGCGAGGAaGCCGAcCACGaccgccuccaGCagGCCGGgGa -3'
miRNA:   3'- -CGCUCUUaCGGCU-GUGC----------CG--UGGCCgU- -5'
23199 5' -57.4 NC_005259.1 + 45119 0.68 0.546158
Target:  5'- cCGAGAgugGUGCCGACGaGGU--CGGCAa -3'
miRNA:   3'- cGCUCU---UACGGCUGUgCCGugGCCGU- -5'
23199 5' -57.4 NC_005259.1 + 44463 0.66 0.694373
Target:  5'- cCGGGGAUGCCGcCGCccuGGC-CgGGCc -3'
miRNA:   3'- cGCUCUUACGGCuGUG---CCGuGgCCGu -5'
23199 5' -57.4 NC_005259.1 + 43884 0.69 0.495115
Target:  5'- aGCGuuGccGCCGACAUugcccGCGCCGGCu -3'
miRNA:   3'- -CGCucUuaCGGCUGUGc----CGUGGCCGu -5'
23199 5' -57.4 NC_005259.1 + 41621 0.7 0.43692
Target:  5'- cGCGAGGcUGaCCaugGugGCGGUGCCGGUc -3'
miRNA:   3'- -CGCUCUuAC-GG---CugUGCCGUGGCCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.