Results 1 - 20 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 17757 | 0.66 | 0.694373 |
Target: 5'- cGUGAGGccGCCG-CGCGccgggccgagcGCACCGaGCGu -3' miRNA: 3'- -CGCUCUuaCGGCuGUGC-----------CGUGGC-CGU- -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 35657 | 0.7 | 0.427604 |
Target: 5'- gGCGAGggUgGCCaGCGCGGUGgUGGUg -3' miRNA: 3'- -CGCUCuuA-CGGcUGUGCCGUgGCCGu -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 41621 | 0.7 | 0.43692 |
Target: 5'- cGCGAGGcUGaCCaugGugGCGGUGCCGGUc -3' miRNA: 3'- -CGCUCUuAC-GG---CugUGCCGUGGCCGu -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 28760 | 0.7 | 0.44635 |
Target: 5'- cGUGAGAucgucgccgGUGCCGACGaGGUacccGCCGGUc -3' miRNA: 3'- -CGCUCU---------UACGGCUGUgCCG----UGGCCGu -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 40067 | 0.69 | 0.465545 |
Target: 5'- cGCGAuGAcccauggGCCGACGC-GCACCGaGCGc -3' miRNA: 3'- -CGCU-CUua-----CGGCUGUGcCGUGGC-CGU- -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 26826 | 0.69 | 0.485161 |
Target: 5'- gGCGGuGGUGCCGGgGCGGUcuGCUcgGGCAg -3' miRNA: 3'- -CGCUcUUACGGCUgUGCCG--UGG--CCGU- -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 37185 | 0.69 | 0.486152 |
Target: 5'- cGCGAGGAcgagcugcggcccuUGCCGcCACcgccgccgccgccggGGCGCUGGCc -3' miRNA: 3'- -CGCUCUU--------------ACGGCuGUG---------------CCGUGGCCGu -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 43884 | 0.69 | 0.495115 |
Target: 5'- aGCGuuGccGCCGACAUugcccGCGCCGGCu -3' miRNA: 3'- -CGCucUuaCGGCUGUGc----CGUGGCCGu -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 8222 | 0.69 | 0.505161 |
Target: 5'- aGCGAGcgugcgguGGUGCCGACACccuGCcuuACCGGUc -3' miRNA: 3'- -CGCUC--------UUACGGCUGUGc--CG---UGGCCGu -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 67956 | 0.71 | 0.391555 |
Target: 5'- uGCGGGuuGUGCUGuaGCGCGcGCAgCGGCGu -3' miRNA: 3'- -CGCUCu-UACGGC--UGUGC-CGUgGCCGU- -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 4513 | 0.71 | 0.374288 |
Target: 5'- cCGGGAGUGgCGcuGCGCGGCAccCCGGUc -3' miRNA: 3'- cGCUCUUACgGC--UGUGCCGU--GGCCGu -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 8636 | 0.71 | 0.357545 |
Target: 5'- gGCGAGAAUgGCgGGCACgaGGCugUGGUc -3' miRNA: 3'- -CGCUCUUA-CGgCUGUG--CCGugGCCGu -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 58727 | 0.81 | 0.093366 |
Target: 5'- cCGGGggUGUCGuugGCAcCGGCACCGGCGa -3' miRNA: 3'- cGCUCuuACGGC---UGU-GCCGUGGCCGU- -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 13448 | 0.79 | 0.113137 |
Target: 5'- gGCGuGAccGUCGGCGCGGCGCUGGUg -3' miRNA: 3'- -CGCuCUuaCGGCUGUGCCGUGGCCGu -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 51334 | 0.78 | 0.14201 |
Target: 5'- aCGAGGAUGCCGGugaGCucggauaugcccgguGGCACCGGCAc -3' miRNA: 3'- cGCUCUUACGGCUg--UG---------------CCGUGGCCGU- -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 21971 | 0.77 | 0.156342 |
Target: 5'- cGCGuGggUGUCGuucucccCAcCGGCACCGGCAa -3' miRNA: 3'- -CGCuCuuACGGCu------GU-GCCGUGGCCGU- -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 27365 | 0.75 | 0.230948 |
Target: 5'- uCGGGcuuGGUGcCCGGCACGGUgACCGGCGg -3' miRNA: 3'- cGCUC---UUAC-GGCUGUGCCG-UGGCCGU- -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 63659 | 0.73 | 0.303166 |
Target: 5'- gGCcGGGAcGCCgGACACcucgGGCACCGGCGc -3' miRNA: 3'- -CGcUCUUaCGG-CUGUG----CCGUGGCCGU- -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 3107 | 0.72 | 0.318027 |
Target: 5'- aGCGGGcg-GCCauuGCGCGGCACCgugGGCAg -3' miRNA: 3'- -CGCUCuuaCGGc--UGUGCCGUGG---CCGU- -5' |
|||||||
23199 | 5' | -57.4 | NC_005259.1 | + | 29051 | 0.72 | 0.325661 |
Target: 5'- aCGAGA--GCCGcgaGCGCGGUAUCGGCc -3' miRNA: 3'- cGCUCUuaCGGC---UGUGCCGUGGCCGu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home