miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2320 5' -62.5 NC_001414.1 + 1501 1.1 0.000011
Target:  5'- cCACCAAGACCACCGGCCCCCCUCCGGg -3'
miRNA:   3'- -GUGGUUCUGGUGGCCGGGGGGAGGCC- -5'
2320 5' -62.5 NC_001414.1 + 4511 0.72 0.020869
Target:  5'- gGCUAGGACCucucCCGGCCCUagucgaagCCUCgGGa -3'
miRNA:   3'- gUGGUUCUGGu---GGCCGGGG--------GGAGgCC- -5'
2320 5' -62.5 NC_001414.1 + 128 0.71 0.029735
Target:  5'- gGCUGAGACCGCCGcgaGCUCUaUCUCCGGu -3'
miRNA:   3'- gUGGUUCUGGUGGC---CGGGG-GGAGGCC- -5'
2320 5' -62.5 NC_001414.1 + 8310 0.71 0.029735
Target:  5'- gGCUGAGACCGCCGcgaGCUCUaUCUCCGGu -3'
miRNA:   3'- gUGGUUCUGGUGGC---CGGGG-GGAGGCC- -5'
2320 5' -62.5 NC_001414.1 + 1411 0.7 0.031604
Target:  5'- uGCCcGGGCCucggcaaccgGCCcccaaaaGGCCCCCC-CCGGg -3'
miRNA:   3'- gUGGuUCUGG----------UGG-------CCGGGGGGaGGCC- -5'
2320 5' -62.5 NC_001414.1 + 2642 0.69 0.045068
Target:  5'- uUAUCAAG-CC-CUGGCugCCCgCCUCCGGg -3'
miRNA:   3'- -GUGGUUCuGGuGGCCG--GGG-GGAGGCC- -5'
2320 5' -62.5 NC_001414.1 + 7259 0.68 0.054533
Target:  5'- -uCCGAGAcCCGCCcccaagGGCCCCgacgaCUCUGGa -3'
miRNA:   3'- guGGUUCU-GGUGG------CCGGGGg----GAGGCC- -5'
2320 5' -62.5 NC_001414.1 + 4869 0.67 0.061888
Target:  5'- -cCUAAGAuCUAUUGGCCCCCC-CCa- -3'
miRNA:   3'- guGGUUCU-GGUGGCCGGGGGGaGGcc -5'
2320 5' -62.5 NC_001414.1 + 7761 0.66 0.079575
Target:  5'- cCGCgAucGACCuauuccuaACCGGUCCCCCUuccccauacgaCCGGu -3'
miRNA:   3'- -GUGgUu-CUGG--------UGGCCGGGGGGA-----------GGCC- -5'
2320 5' -62.5 NC_001414.1 + 1337 0.66 0.079575
Target:  5'- cCACCGGGGCgGCCacuaGGCCCCgC-CCu- -3'
miRNA:   3'- -GUGGUUCUGgUGG----CCGGGGgGaGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.