miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23200 3' -57.7 NC_005259.1 + 68056 0.66 0.691661
Target:  5'- gCGAGgUGAGCACGcgcucaaucgauGUGCUGaucagCUCGAu -3'
miRNA:   3'- -GCUCgGCUCGUGC------------CACGGCaa---GAGCU- -5'
23200 3' -57.7 NC_005259.1 + 5072 0.67 0.586163
Target:  5'- uGGGCCGGGUcgACGG-GCCGgugUCaccggCGAu -3'
miRNA:   3'- gCUCGGCUCG--UGCCaCGGCa--AGa----GCU- -5'
23200 3' -57.7 NC_005259.1 + 8403 0.67 0.614643
Target:  5'- gCGAGCCGGGCcaccucgcugGCGaGcaugcgaugcucguUGCCGguggUCUCGGu -3'
miRNA:   3'- -GCUCGGCUCG----------UGC-C--------------ACGGCa---AGAGCU- -5'
23200 3' -57.7 NC_005259.1 + 51677 0.67 0.614643
Target:  5'- uCGGGCaCGGGCGCgcgauggucucauaGGUGCCGaacUgUCGAc -3'
miRNA:   3'- -GCUCG-GCUCGUG--------------CCACGGCa--AgAGCU- -5'
23200 3' -57.7 NC_005259.1 + 45114 0.67 0.628402
Target:  5'- uCGGGCCGAGagUGGUGCCGa---CGAg -3'
miRNA:   3'- -GCUCGGCUCguGCCACGGCaagaGCU- -5'
23200 3' -57.7 NC_005259.1 + 68668 0.67 0.628402
Target:  5'- gGuGuuGAGcCACGGgaugGCC-UUCUCGAu -3'
miRNA:   3'- gCuCggCUC-GUGCCa---CGGcAAGAGCU- -5'
23200 3' -57.7 NC_005259.1 + 68424 0.66 0.63899
Target:  5'- uGAcGCCucGCGCGG-GCCGguugauguagUUCUCGAc -3'
miRNA:   3'- gCU-CGGcuCGUGCCaCGGC----------AAGAGCU- -5'
23200 3' -57.7 NC_005259.1 + 53535 0.66 0.649573
Target:  5'- aCGGGCuCGGuGCcCGGUGUCGg-CUCGGg -3'
miRNA:   3'- -GCUCG-GCU-CGuGCCACGGCaaGAGCU- -5'
23200 3' -57.7 NC_005259.1 + 21190 0.66 0.670684
Target:  5'- -cGGCgCGAGCACcaagcugcaaGGUGCCGagCUCa- -3'
miRNA:   3'- gcUCG-GCUCGUG----------CCACGGCaaGAGcu -5'
23200 3' -57.7 NC_005259.1 + 50405 0.68 0.524004
Target:  5'- --cGCCGAGCGCgccGGUGCCuugaccggCUCGGg -3'
miRNA:   3'- gcuCGGCUCGUG---CCACGGcaa-----GAGCU- -5'
23200 3' -57.7 NC_005259.1 + 26403 0.68 0.524004
Target:  5'- cCGAcGCCGGGCgcgGCGGUGCCGccguaGAa -3'
miRNA:   3'- -GCU-CGGCUCG---UGCCACGGCaagagCU- -5'
23200 3' -57.7 NC_005259.1 + 62155 0.69 0.493856
Target:  5'- -aGGCCGcAGCACcucggGGUGCgCGaUCUCGAc -3'
miRNA:   3'- gcUCGGC-UCGUG-----CCACG-GCaAGAGCU- -5'
23200 3' -57.7 NC_005259.1 + 67853 0.75 0.214627
Target:  5'- gCGGGUCGAcCAauCGGUGCCGUaggUCUCGAu -3'
miRNA:   3'- -GCUCGGCUcGU--GCCACGGCA---AGAGCU- -5'
23200 3' -57.7 NC_005259.1 + 54022 0.72 0.341272
Target:  5'- gCGAcGCuCGGGCGCGGUGCgG-UCUgCGAa -3'
miRNA:   3'- -GCU-CG-GCUCGUGCCACGgCaAGA-GCU- -5'
23200 3' -57.7 NC_005259.1 + 45630 0.72 0.341272
Target:  5'- cCGGGCCGGGCAgcgcgcCGGUGCCGccg-UGAa -3'
miRNA:   3'- -GCUCGGCUCGU------GCCACGGCaagaGCU- -5'
23200 3' -57.7 NC_005259.1 + 1412 0.71 0.373986
Target:  5'- aCGAcCCGAGCACGGcauacGUCGUgCUCGGg -3'
miRNA:   3'- -GCUcGGCUCGUGCCa----CGGCAaGAGCU- -5'
23200 3' -57.7 NC_005259.1 + 67410 0.71 0.391121
Target:  5'- aCGGGCCGA-CACcaucggGGUGCCGggCUCa- -3'
miRNA:   3'- -GCUCGGCUcGUG------CCACGGCaaGAGcu -5'
23200 3' -57.7 NC_005259.1 + 58572 0.7 0.426889
Target:  5'- uGGGCCGgaucgcGGCGCGGcUGCCGggccggaucUUUUCGAg -3'
miRNA:   3'- gCUCGGC------UCGUGCC-ACGGC---------AAGAGCU- -5'
23200 3' -57.7 NC_005259.1 + 28965 0.7 0.43613
Target:  5'- --cGCCGAGguCGGUGCCGaggCcgCGAg -3'
miRNA:   3'- gcuCGGCUCguGCCACGGCaa-Ga-GCU- -5'
23200 3' -57.7 NC_005259.1 + 59140 0.69 0.464526
Target:  5'- uCGAGCUcGGCAgCGGUGCCGgggagcugCUCa- -3'
miRNA:   3'- -GCUCGGcUCGU-GCCACGGCaa------GAGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.