miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23200 5' -54.1 NC_005259.1 + 61155 1.12 0.001287
Target:  5'- gACUCAAGGACACCGACGGUGUACGCCu -3'
miRNA:   3'- -UGAGUUCCUGUGGCUGCCACAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 61992 0.77 0.271499
Target:  5'- uGCUCugcaccauGGGCACCGuGCGGUGUAC-CCg -3'
miRNA:   3'- -UGAGuu------CCUGUGGC-UGCCACAUGcGG- -5'
23200 5' -54.1 NC_005259.1 + 17821 0.76 0.314743
Target:  5'- aGCUCAgcgAGGcCAUCGACGG-GUGgGCCg -3'
miRNA:   3'- -UGAGU---UCCuGUGGCUGCCaCAUgCGG- -5'
23200 5' -54.1 NC_005259.1 + 6040 0.74 0.388976
Target:  5'- gUUCAGcGACACCGACGagcucGUGUGCGCg -3'
miRNA:   3'- uGAGUUcCUGUGGCUGC-----CACAUGCGg -5'
23200 5' -54.1 NC_005259.1 + 720 0.74 0.397903
Target:  5'- gGCaucgCGAGaaucACACCGGCGGUGccUACGCCg -3'
miRNA:   3'- -UGa---GUUCc---UGUGGCUGCCAC--AUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 66931 0.74 0.406049
Target:  5'- uGCUCGaccggggugagcGGGACACCGGCGaGcUGUuucuugcGCGCCu -3'
miRNA:   3'- -UGAGU------------UCCUGUGGCUGC-C-ACA-------UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 56652 0.74 0.406961
Target:  5'- aGCaUCGAGGGCACCGcgcgucACGGgcucguUGCGCCa -3'
miRNA:   3'- -UG-AGUUCCUGUGGC------UGCCac----AUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 56210 0.74 0.425457
Target:  5'- uGCUCAAGGAU-----CGGUGUAUGCCa -3'
miRNA:   3'- -UGAGUUCCUGuggcuGCCACAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 972 0.73 0.433943
Target:  5'- gGCUCAAcggcgacGaGACACCGGCagccguguGGUGUACGCg -3'
miRNA:   3'- -UGAGUU-------C-CUGUGGCUG--------CCACAUGCGg -5'
23200 5' -54.1 NC_005259.1 + 24009 0.73 0.444446
Target:  5'- cACUCGAGGACACC-ACGGggcuggcgaaaUGgaacCGCCg -3'
miRNA:   3'- -UGAGUUCCUGUGGcUGCC-----------ACau--GCGG- -5'
23200 5' -54.1 NC_005259.1 + 7173 0.72 0.504081
Target:  5'- --aCGAGGGCACCGGCGaGUGcccgGCCu -3'
miRNA:   3'- ugaGUUCCUGUGGCUGC-CACaug-CGG- -5'
23200 5' -54.1 NC_005259.1 + 56698 0.72 0.524732
Target:  5'- gGCUgCGAGGugGCCacGAUGGUGUccccgagcGCGUCg -3'
miRNA:   3'- -UGA-GUUCCugUGG--CUGCCACA--------UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 4471 0.71 0.54148
Target:  5'- gGC-CAAGGcCAUCGGCGGUGgaccauggugauCGCCa -3'
miRNA:   3'- -UGaGUUCCuGUGGCUGCCACau----------GCGG- -5'
23200 5' -54.1 NC_005259.1 + 36362 0.71 0.566921
Target:  5'- aGCUCAAgGGAUugCGucgaaGCGGcgagGUugGCCa -3'
miRNA:   3'- -UGAGUU-CCUGugGC-----UGCCa---CAugCGG- -5'
23200 5' -54.1 NC_005259.1 + 34732 0.71 0.577614
Target:  5'- -gUCGGGGAaACCGuuGGUgaucGUGCGCCa -3'
miRNA:   3'- ugAGUUCCUgUGGCugCCA----CAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 45508 0.7 0.609923
Target:  5'- cGCUgu-GGcCACCGcgcCGGUGUugGCCg -3'
miRNA:   3'- -UGAguuCCuGUGGCu--GCCACAugCGG- -5'
23200 5' -54.1 NC_005259.1 + 63182 0.7 0.620741
Target:  5'- cGC-CGAGGugAUCGcacccCGGUcGUGCGCCu -3'
miRNA:   3'- -UGaGUUCCugUGGCu----GCCA-CAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 61215 0.7 0.631569
Target:  5'- -aUCGcAGGAag-CGGCGGUGUGCGCa -3'
miRNA:   3'- ugAGU-UCCUgugGCUGCCACAUGCGg -5'
23200 5' -54.1 NC_005259.1 + 57311 0.7 0.649973
Target:  5'- -aUCGA--GCACCGGCGGUGUcgguguggucauguGCGCUg -3'
miRNA:   3'- ugAGUUccUGUGGCUGCCACA--------------UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 53009 0.7 0.653217
Target:  5'- cCUCGAcuGGGCGCUG-CGGUG-GCGUCg -3'
miRNA:   3'- uGAGUU--CCUGUGGCuGCCACaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.