miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23200 5' -54.1 NC_005259.1 + 720 0.74 0.397903
Target:  5'- gGCaucgCGAGaaucACACCGGCGGUGccUACGCCg -3'
miRNA:   3'- -UGa---GUUCc---UGUGGCUGCCAC--AUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 972 0.73 0.433943
Target:  5'- gGCUCAAcggcgacGaGACACCGGCagccguguGGUGUACGCg -3'
miRNA:   3'- -UGAGUU-------C-CUGUGGCUG--------CCACAUGCGg -5'
23200 5' -54.1 NC_005259.1 + 2693 0.69 0.696205
Target:  5'- cGCaUCGAGGACAagGACGGUuucacCGCCg -3'
miRNA:   3'- -UG-AGUUCCUGUggCUGCCAcau--GCGG- -5'
23200 5' -54.1 NC_005259.1 + 4151 0.66 0.825682
Target:  5'- gUUCAAGGACGCgauggucaCGAUGGUc-ACGCUg -3'
miRNA:   3'- uGAGUUCCUGUG--------GCUGCCAcaUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 4260 0.68 0.748505
Target:  5'- gACUgCGAGGACaACgGGCGGc-UGCGCUg -3'
miRNA:   3'- -UGA-GUUCCUG-UGgCUGCCacAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 4471 0.71 0.54148
Target:  5'- gGC-CAAGGcCAUCGGCGGUGgaccauggugauCGCCa -3'
miRNA:   3'- -UGaGUUCCuGUGGCUGCCACau----------GCGG- -5'
23200 5' -54.1 NC_005259.1 + 6040 0.74 0.388976
Target:  5'- gUUCAGcGACACCGACGagcucGUGUGCGCg -3'
miRNA:   3'- uGAGUUcCUGUGGCUGC-----CACAUGCGg -5'
23200 5' -54.1 NC_005259.1 + 7173 0.72 0.504081
Target:  5'- --aCGAGGGCACCGGCGaGUGcccgGCCu -3'
miRNA:   3'- ugaGUUCCUGUGGCUGC-CACaug-CGG- -5'
23200 5' -54.1 NC_005259.1 + 8488 0.67 0.788351
Target:  5'- cGCUguc-GGCACUGAUGGUGUGCaCCa -3'
miRNA:   3'- -UGAguucCUGUGGCUGCCACAUGcGG- -5'
23200 5' -54.1 NC_005259.1 + 9702 0.69 0.706828
Target:  5'- cGCUCAcuGGGCACCGuccuCGGgccgGUcgagcuCGCCg -3'
miRNA:   3'- -UGAGUu-CCUGUGGCu---GCCa---CAu-----GCGG- -5'
23200 5' -54.1 NC_005259.1 + 10075 0.69 0.706828
Target:  5'- cCUCGcAGGACGCCGACGaGUagaccccgAgGCCa -3'
miRNA:   3'- uGAGU-UCCUGUGGCUGC-CAca------UgCGG- -5'
23200 5' -54.1 NC_005259.1 + 10446 0.67 0.807372
Target:  5'- -aUCGAGuGGCucgaCGGCGGUGUccuGCGCa -3'
miRNA:   3'- ugAGUUC-CUGug--GCUGCCACA---UGCGg -5'
23200 5' -54.1 NC_005259.1 + 15987 0.67 0.788351
Target:  5'- -gUCGAGuGAuCACCGcCGGUGgcCGCa -3'
miRNA:   3'- ugAGUUC-CU-GUGGCuGCCACauGCGg -5'
23200 5' -54.1 NC_005259.1 + 16693 0.69 0.674789
Target:  5'- -aUCcuGGGCACCGA-GGUGacCGCCg -3'
miRNA:   3'- ugAGuuCCUGUGGCUgCCACauGCGG- -5'
23200 5' -54.1 NC_005259.1 + 17821 0.76 0.314743
Target:  5'- aGCUCAgcgAGGcCAUCGACGG-GUGgGCCg -3'
miRNA:   3'- -UGAGU---UCCuGUGGCUGCCaCAUgCGG- -5'
23200 5' -54.1 NC_005259.1 + 17881 0.66 0.842349
Target:  5'- cGCUCGguuGGACccccgcaccgcgcGCCGAUGcGUGUggAUGCCc -3'
miRNA:   3'- -UGAGUu--CCUG-------------UGGCUGC-CACA--UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 19106 0.66 0.851648
Target:  5'- aACUCAccGGCGCUGgu-GUGUGCGUCg -3'
miRNA:   3'- -UGAGUucCUGUGGCugcCACAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 19865 0.66 0.851648
Target:  5'- cGCUCGcgcccgccGGGAuCGCCGACGcc--GCGCCc -3'
miRNA:   3'- -UGAGU--------UCCU-GUGGCUGCcacaUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 20400 0.68 0.73823
Target:  5'- gACguagCAAGGGCAUCGAggucuaccCGGUcaccgACGCCa -3'
miRNA:   3'- -UGa---GUUCCUGUGGCU--------GCCAca---UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 23304 0.68 0.727852
Target:  5'- -aUCGGGGuccgGCGCgGuCGGUGU-CGCCg -3'
miRNA:   3'- ugAGUUCC----UGUGgCuGCCACAuGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.