miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23200 5' -54.1 NC_005259.1 + 4471 0.71 0.54148
Target:  5'- gGC-CAAGGcCAUCGGCGGUGgaccauggugauCGCCa -3'
miRNA:   3'- -UGaGUUCCuGUGGCUGCCACau----------GCGG- -5'
23200 5' -54.1 NC_005259.1 + 36362 0.71 0.566921
Target:  5'- aGCUCAAgGGAUugCGucgaaGCGGcgagGUugGCCa -3'
miRNA:   3'- -UGAGUU-CCUGugGC-----UGCCa---CAugCGG- -5'
23200 5' -54.1 NC_005259.1 + 34732 0.71 0.577614
Target:  5'- -gUCGGGGAaACCGuuGGUgaucGUGCGCCa -3'
miRNA:   3'- ugAGUUCCUgUGGCugCCA----CAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 9702 0.69 0.706828
Target:  5'- cGCUCAcuGGGCACCGuccuCGGgccgGUcgagcuCGCCg -3'
miRNA:   3'- -UGAGUu-CCUGUGGCu---GCCa---CAu-----GCGG- -5'
23200 5' -54.1 NC_005259.1 + 2693 0.69 0.696205
Target:  5'- cGCaUCGAGGACAagGACGGUuucacCGCCg -3'
miRNA:   3'- -UG-AGUUCCUGUggCUGCCAcau--GCGG- -5'
23200 5' -54.1 NC_005259.1 + 16693 0.69 0.674789
Target:  5'- -aUCcuGGGCACCGA-GGUGacCGCCg -3'
miRNA:   3'- ugAGuuCCUGUGGCUgCCACauGCGG- -5'
23200 5' -54.1 NC_005259.1 + 64603 0.69 0.674789
Target:  5'- --aCGAGGugACUGACGGcGaGCGCg -3'
miRNA:   3'- ugaGUUCCugUGGCUGCCaCaUGCGg -5'
23200 5' -54.1 NC_005259.1 + 37269 0.7 0.65754
Target:  5'- gGCUUGAGGcCGCCcggcaggacuugcauGGCGGUGccCGCCg -3'
miRNA:   3'- -UGAGUUCCuGUGG---------------CUGCCACauGCGG- -5'
23200 5' -54.1 NC_005259.1 + 53009 0.7 0.653217
Target:  5'- cCUCGAcuGGGCGCUG-CGGUG-GCGUCg -3'
miRNA:   3'- uGAGUU--CCUGUGGCuGCCACaUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 30959 0.7 0.653217
Target:  5'- cGC-CGAGcACACCGAUGGUGUA-GCa -3'
miRNA:   3'- -UGaGUUCcUGUGGCUGCCACAUgCGg -5'
23200 5' -54.1 NC_005259.1 + 57311 0.7 0.649973
Target:  5'- -aUCGA--GCACCGGCGGUGUcgguguggucauguGCGCUg -3'
miRNA:   3'- ugAGUUccUGUGGCUGCCACA--------------UGCGG- -5'
23200 5' -54.1 NC_005259.1 + 61215 0.7 0.631569
Target:  5'- -aUCGcAGGAag-CGGCGGUGUGCGCa -3'
miRNA:   3'- ugAGU-UCCUgugGCUGCCACAUGCGg -5'
23200 5' -54.1 NC_005259.1 + 63182 0.7 0.620741
Target:  5'- cGC-CGAGGugAUCGcacccCGGUcGUGCGCCu -3'
miRNA:   3'- -UGaGUUCCugUGGCu----GCCA-CAUGCGG- -5'
23200 5' -54.1 NC_005259.1 + 45508 0.7 0.609923
Target:  5'- cGCUgu-GGcCACCGcgcCGGUGUugGCCg -3'
miRNA:   3'- -UGAguuCCuGUGGCu--GCCACAugCGG- -5'
23200 5' -54.1 NC_005259.1 + 61155 1.12 0.001287
Target:  5'- gACUCAAGGACACCGACGGUGUACGCCu -3'
miRNA:   3'- -UGAGUUCCUGUGGCUGCCACAUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.