miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23201 3' -58.6 NC_005259.1 + 62764 0.66 0.622725
Target:  5'- uACUCGuGGGCCGGAA--CGUCGcGCa-- -3'
miRNA:   3'- -UGGGC-UCCGGCCUUuaGCAGC-CGcua -5'
23201 3' -58.6 NC_005259.1 + 47030 0.66 0.612123
Target:  5'- cGCCUccaGcAGGCCGGGGAUCugcgcgagcguGUUGGUGAg -3'
miRNA:   3'- -UGGG---C-UCCGGCCUUUAG-----------CAGCCGCUa -5'
23201 3' -58.6 NC_005259.1 + 31684 0.66 0.612123
Target:  5'- uGCCCGAGGC-----AUCcUCGGCGGUg -3'
miRNA:   3'- -UGGGCUCCGgccuuUAGcAGCCGCUA- -5'
23201 3' -58.6 NC_005259.1 + 38278 0.66 0.601537
Target:  5'- cCCCGAGGUgagaaugucauCGGcgcuGAUCGUCGGacCGAUc -3'
miRNA:   3'- uGGGCUCCG-----------GCCu---UUAGCAGCC--GCUA- -5'
23201 3' -58.6 NC_005259.1 + 39908 0.66 0.598365
Target:  5'- cGCCCGccucgauccgucgaGGGCCGcgucGAGGUCGUCcuuGGUGAc -3'
miRNA:   3'- -UGGGC--------------UCCGGC----CUUUAGCAG---CCGCUa -5'
23201 3' -58.6 NC_005259.1 + 16814 0.66 0.580446
Target:  5'- cGCUCGGGGCCGGGgucauGAUCcgacacaaGGCGGg -3'
miRNA:   3'- -UGGGCUCCGGCCU-----UUAGcag-----CCGCUa -5'
23201 3' -58.6 NC_005259.1 + 45624 0.66 0.569956
Target:  5'- uGCCCGccGGGCCGGGcaGcgCGcCGGUGc- -3'
miRNA:   3'- -UGGGC--UCCGGCCU--UuaGCaGCCGCua -5'
23201 3' -58.6 NC_005259.1 + 60532 0.67 0.549125
Target:  5'- -gCCG-GGCCGGGAcgcagccgcUCGUCGGCa-- -3'
miRNA:   3'- ugGGCuCCGGCCUUu--------AGCAGCCGcua -5'
23201 3' -58.6 NC_005259.1 + 26807 0.67 0.528537
Target:  5'- cGCCCGGuuGGCCGGuac-CGgCGGUGGUg -3'
miRNA:   3'- -UGGGCU--CCGGCCuuuaGCaGCCGCUA- -5'
23201 3' -58.6 NC_005259.1 + 47929 0.67 0.508241
Target:  5'- -gCCGAGGCCcuGGAAGcCGaugaCGGCGGUg -3'
miRNA:   3'- ugGGCUCCGG--CCUUUaGCa---GCCGCUA- -5'
23201 3' -58.6 NC_005259.1 + 24019 0.68 0.492244
Target:  5'- cACCaCGGGGCUGGcgaAAuggaaccgccgcaacGUCGUCGGCGc- -3'
miRNA:   3'- -UGG-GCUCCGGCC---UU---------------UAGCAGCCGCua -5'
23201 3' -58.6 NC_005259.1 + 64021 0.68 0.488282
Target:  5'- cGCCCGAGGCgCGGcGAg-GcCGGUGAc -3'
miRNA:   3'- -UGGGCUCCG-GCCuUUagCaGCCGCUa -5'
23201 3' -58.6 NC_005259.1 + 58912 0.68 0.459059
Target:  5'- gGCUCGucGgCGGucuuGUCGUCGGCGGg -3'
miRNA:   3'- -UGGGCucCgGCCuu--UAGCAGCCGCUa -5'
23201 3' -58.6 NC_005259.1 + 43513 0.69 0.421601
Target:  5'- cCUCGGaacuGCCGGAAAUCGUCGGUc-- -3'
miRNA:   3'- uGGGCUc---CGGCCUUUAGCAGCCGcua -5'
23201 3' -58.6 NC_005259.1 + 14022 0.69 0.403575
Target:  5'- uGCCCGAcGGCacgaucaucgagCGGcAGcgcAUCGUCGGCGAc -3'
miRNA:   3'- -UGGGCU-CCG------------GCC-UU---UAGCAGCCGCUa -5'
23201 3' -58.6 NC_005259.1 + 58962 0.7 0.37747
Target:  5'- gGCCagcAGGUCGGGcagcUCGUCGGCGAc -3'
miRNA:   3'- -UGGgc-UCCGGCCUuu--AGCAGCCGCUa -5'
23201 3' -58.6 NC_005259.1 + 46592 0.71 0.313602
Target:  5'- cGCCCGAGGC--GAGcagcgcGUCGUUGGCGGUc -3'
miRNA:   3'- -UGGGCUCCGgcCUU------UAGCAGCCGCUA- -5'
23201 3' -58.6 NC_005259.1 + 38749 0.72 0.284872
Target:  5'- gGCCCGccgcAGGCCGGugagcugcgcGAUCauGUCGGCGAa -3'
miRNA:   3'- -UGGGC----UCCGGCCu---------UUAG--CAGCCGCUa -5'
23201 3' -58.6 NC_005259.1 + 18323 0.72 0.284872
Target:  5'- gACaCCGAGGCCGGugcguUCGUggucgacgccgaCGGCGAc -3'
miRNA:   3'- -UG-GGCUCCGGCCuuu--AGCA------------GCCGCUa -5'
23201 3' -58.6 NC_005259.1 + 18732 0.72 0.271305
Target:  5'- cGCCCGGcaUCGGuAAGUCGUCGGUGGUg -3'
miRNA:   3'- -UGGGCUccGGCC-UUUAGCAGCCGCUA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.