miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23202 3' -56 NC_005259.1 + 53251 0.66 0.791709
Target:  5'- gCCGACACCgUCGccgCCGcuguCGCcGGUg -3'
miRNA:   3'- gGGCUGUGG-AGCuaaGGCu---GCGaCCA- -5'
23202 3' -56 NC_005259.1 + 20847 0.66 0.791709
Target:  5'- gUCCGACGCCUgcaaGGUgUUCGACGCgaucaagcaGGUg -3'
miRNA:   3'- -GGGCUGUGGAg---CUA-AGGCUGCGa--------CCA- -5'
23202 3' -56 NC_005259.1 + 16654 0.66 0.776405
Target:  5'- gCCGACaauuucggggugaccGCCUCGAUguggUCGGCGaucCUGGg -3'
miRNA:   3'- gGGCUG---------------UGGAGCUAa---GGCUGC---GACCa -5'
23202 3' -56 NC_005259.1 + 8069 0.66 0.772522
Target:  5'- gCCGACAUCgagaUCGug-CCG-CGCUGGc -3'
miRNA:   3'- gGGCUGUGG----AGCuaaGGCuGCGACCa -5'
23202 3' -56 NC_005259.1 + 13449 0.66 0.76272
Target:  5'- -gCGugACCgUCGGcg-CGGCGCUGGUg -3'
miRNA:   3'- ggGCugUGG-AGCUaagGCUGCGACCA- -5'
23202 3' -56 NC_005259.1 + 25964 0.67 0.732607
Target:  5'- gCCGACGCCUgCGAUgagaCCGggcaGCGCcgaGGUg -3'
miRNA:   3'- gGGCUGUGGA-GCUAa---GGC----UGCGa--CCA- -5'
23202 3' -56 NC_005259.1 + 45605 0.67 0.722367
Target:  5'- aCCGACAgCUCGGUcUCGAUGCccgccGGg -3'
miRNA:   3'- gGGCUGUgGAGCUAaGGCUGCGa----CCa -5'
23202 3' -56 NC_005259.1 + 58744 0.67 0.701647
Target:  5'- aCCGGCACCggCGAagUUCggcgaaCGACGCUGcGg -3'
miRNA:   3'- gGGCUGUGGa-GCU--AAG------GCUGCGAC-Ca -5'
23202 3' -56 NC_005259.1 + 10894 0.69 0.617027
Target:  5'- aCCCGGCcCCgUCG-UUCCucGAUGCUGGc -3'
miRNA:   3'- -GGGCUGuGG-AGCuAAGG--CUGCGACCa -5'
23202 3' -56 NC_005259.1 + 19081 0.69 0.602169
Target:  5'- gUCCGGCGCUacgacaagcugcgCGAacucaCCGGCGCUGGUg -3'
miRNA:   3'- -GGGCUGUGGa------------GCUaa---GGCUGCGACCA- -5'
23202 3' -56 NC_005259.1 + 52140 0.69 0.585247
Target:  5'- gUCCGGCACCUCG---CCGAgGCaGGc -3'
miRNA:   3'- -GGGCUGUGGAGCuaaGGCUgCGaCCa -5'
23202 3' -56 NC_005259.1 + 9819 0.7 0.512696
Target:  5'- gCCCG-CACCgcCGggUgCGGCGCUGGc -3'
miRNA:   3'- -GGGCuGUGGa-GCuaAgGCUGCGACCa -5'
23202 3' -56 NC_005259.1 + 11957 0.71 0.453604
Target:  5'- gCCCGgcgaGCACgUCGAacCCGGCGaCUGGUa -3'
miRNA:   3'- -GGGC----UGUGgAGCUaaGGCUGC-GACCA- -5'
23202 3' -56 NC_005259.1 + 32222 0.72 0.425474
Target:  5'- aCCGACGCCUCGGcaCCGA-GCUGc- -3'
miRNA:   3'- gGGCUGUGGAGCUaaGGCUgCGACca -5'
23202 3' -56 NC_005259.1 + 26386 0.72 0.425474
Target:  5'- gCCUGuuGCUcgCGAUUCCGACGCcGGg -3'
miRNA:   3'- -GGGCugUGGa-GCUAAGGCUGCGaCCa -5'
23202 3' -56 NC_005259.1 + 50770 0.75 0.309109
Target:  5'- -aCGACACCUCGGccUCG-CGCUGGUa -3'
miRNA:   3'- ggGCUGUGGAGCUaaGGCuGCGACCA- -5'
23202 3' -56 NC_005259.1 + 63668 0.78 0.177809
Target:  5'- gCCgGACACCUCGGgcaCCGGCGCgccgGGg -3'
miRNA:   3'- -GGgCUGUGGAGCUaa-GGCUGCGa---CCa -5'
23202 3' -56 NC_005259.1 + 60450 1.08 0.001523
Target:  5'- gCCCGACACCUCGAUUCCGACGCUGGUc -3'
miRNA:   3'- -GGGCUGUGGAGCUAAGGCUGCGACCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.