miRNA display CGI


Results 61 - 71 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23202 5' -62.8 NC_005259.1 + 63689 0.72 0.152268
Target:  5'- cGCGCCGGggaucugcgccUGCCCAGCggggaucggggccuGCGCaGCCGGUa -3'
miRNA:   3'- -CGUGGUC-----------GCGGGUCG--------------UGCG-CGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 27932 0.72 0.14953
Target:  5'- cGguUCGGCGaCCCAGCu--CGCCGGUGa -3'
miRNA:   3'- -CguGGUCGC-GGGUCGugcGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 12213 0.72 0.165794
Target:  5'- uGCACCGGCGCaCC-GCcCGCugGCCGGg- -3'
miRNA:   3'- -CGUGGUCGCG-GGuCGuGCG--CGGCCac -5'
23202 5' -62.8 NC_005259.1 + 64015 0.73 0.127847
Target:  5'- cCACC-GCGCCCgaGGCGCGgcgagGCCGGUGa -3'
miRNA:   3'- cGUGGuCGCGGG--UCGUGCg----CGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 6443 0.74 0.11813
Target:  5'- gGCACCGucGCGCUgauCGGCAgCGuCGCCGGUGc -3'
miRNA:   3'- -CGUGGU--CGCGG---GUCGU-GC-GCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 48451 0.74 0.112038
Target:  5'- aGCGgCAGCGCguuCCAcCGCGCGCCGGg- -3'
miRNA:   3'- -CGUgGUCGCG---GGUcGUGCGCGGCCac -5'
23202 5' -62.8 NC_005259.1 + 23301 0.74 0.11813
Target:  5'- gGUAUCGGgGUCCGGCGCG-GUCGGUGu -3'
miRNA:   3'- -CGUGGUCgCGGGUCGUGCgCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 20659 0.75 0.102627
Target:  5'- gGCACCGGggccgaggaCGCCaugauguggucgcaCGGCACGCGCuCGGUGg -3'
miRNA:   3'- -CGUGGUC---------GCGG--------------GUCGUGCGCG-GCCAC- -5'
23202 5' -62.8 NC_005259.1 + 2216 0.78 0.053601
Target:  5'- cGCACCgAGCGCCCGGCcucgccauuugucgGCGacaGCCGGUa -3'
miRNA:   3'- -CGUGG-UCGCGGGUCG--------------UGCg--CGGCCAc -5'
23202 5' -62.8 NC_005259.1 + 45627 0.79 0.048429
Target:  5'- cCGCCGG-GCCgGGCAgCGCGCCGGUGc -3'
miRNA:   3'- cGUGGUCgCGGgUCGU-GCGCGGCCAC- -5'
23202 5' -62.8 NC_005259.1 + 60487 1.09 0.000249
Target:  5'- cGCACCAGCGCCCAGCACGCGCCGGUGu -3'
miRNA:   3'- -CGUGGUCGCGGGUCGUGCGCGGCCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.