Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23202 | 5' | -62.8 | NC_005259.1 | + | 735 | 0.68 | 0.272651 |
Target: 5'- aCACCGGCgguGCCUA-CGC-CGCCGGUGc -3' miRNA: 3'- cGUGGUCG---CGGGUcGUGcGCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 2216 | 0.78 | 0.053601 |
Target: 5'- cGCACCgAGCGCCCGGCcucgccauuugucgGCGacaGCCGGUa -3' miRNA: 3'- -CGUGG-UCGCGGGUCG--------------UGCg--CGGCCAc -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 4531 | 0.67 | 0.328859 |
Target: 5'- gGCACCccggucgauuGUGCCCAGUGCGgGCacgaGGUc -3' miRNA: 3'- -CGUGGu---------CGCGGGUCGUGCgCGg---CCAc -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 4652 | 0.66 | 0.410487 |
Target: 5'- cGCACC-GCGCCU---ACGgGCaCGGUGu -3' miRNA: 3'- -CGUGGuCGCGGGucgUGCgCG-GCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 5471 | 0.67 | 0.352831 |
Target: 5'- aGCACCaauggccggugcaauAGCGCCgAGCgaggaucgagcuacGCGCGCCGc-- -3' miRNA: 3'- -CGUGG---------------UCGCGGgUCG--------------UGCGCGGCcac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 6443 | 0.74 | 0.11813 |
Target: 5'- gGCACCGucGCGCUgauCGGCAgCGuCGCCGGUGc -3' miRNA: 3'- -CGUGGU--CGCGG---GUCGU-GC-GCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 7178 | 0.71 | 0.170101 |
Target: 5'- gGCACCGGCgaguGCCCGGCcugcggACGCaCCGGg- -3' miRNA: 3'- -CGUGGUCG----CGGGUCG------UGCGcGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 8574 | 0.67 | 0.360018 |
Target: 5'- aGCACCGccacCGCCCAcGCACGauCCGGc- -3' miRNA: 3'- -CGUGGUc---GCGGGU-CGUGCgcGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 9631 | 0.67 | 0.341079 |
Target: 5'- cGCGCCGGUGCCCucgaucaccuCGuCGUCGGUa -3' miRNA: 3'- -CGUGGUCGCGGGucgu------GC-GCGGCCAc -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 9807 | 0.7 | 0.208287 |
Target: 5'- cGCGCCAcuacCGCCC-GCAC-CGCCGGg- -3' miRNA: 3'- -CGUGGUc---GCGGGuCGUGcGCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 10127 | 0.66 | 0.39318 |
Target: 5'- cGCAUCA--GCCCAcGCGCGCGCCc--- -3' miRNA: 3'- -CGUGGUcgCGGGU-CGUGCGCGGccac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 11011 | 0.66 | 0.401774 |
Target: 5'- cGCGCCGgacGCGCCgaGGCAgGaguuCGCCgGGUGg -3' miRNA: 3'- -CGUGGU---CGCGGg-UCGUgC----GCGG-CCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 12213 | 0.72 | 0.165794 |
Target: 5'- uGCACCGGCGCaCC-GCcCGCugGCCGGg- -3' miRNA: 3'- -CGUGGUCGCG-GGuCGuGCG--CGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 13441 | 0.71 | 0.183628 |
Target: 5'- cGCGCUAgGCGUgaccgUCGGCGCgGCGCUGGUGc -3' miRNA: 3'- -CGUGGU-CGCG-----GGUCGUG-CGCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 17770 | 0.68 | 0.297636 |
Target: 5'- cGCGCCGG-GCCgAGCgcaccgagcguGCGCaccgcgauagcgagGCCGGUGa -3' miRNA: 3'- -CGUGGUCgCGGgUCG-----------UGCG--------------CGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 17904 | 0.66 | 0.401774 |
Target: 5'- cGCGCCgaugcguguGGaUGCCCGGUcuggacCGCGCCcGGUGu -3' miRNA: 3'- -CGUGG---------UC-GCGGGUCGu-----GCGCGG-CCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 18723 | 0.66 | 0.376353 |
Target: 5'- uCAUCGGgcCGCCCGGCAUcgguaaGuCGUCGGUGg -3' miRNA: 3'- cGUGGUC--GCGGGUCGUG------C-GCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 18852 | 0.66 | 0.375524 |
Target: 5'- uCGCCGGUGCCguGCaacgguuGCGCGCgUGGg- -3' miRNA: 3'- cGUGGUCGCGGguCG-------UGCGCG-GCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 19851 | 0.67 | 0.344185 |
Target: 5'- cGCGCUcgguguGGCGCUC-GCGCcCGCCGGg- -3' miRNA: 3'- -CGUGG------UCGCGGGuCGUGcGCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 20246 | 0.66 | 0.384705 |
Target: 5'- cGCACCcuGUGCgaCAcGC-CGCGCCGGg- -3' miRNA: 3'- -CGUGGu-CGCGg-GU-CGuGCGCGGCCac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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