Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23202 | 5' | -62.8 | NC_005259.1 | + | 68803 | 0.66 | 0.414006 |
Target: 5'- gGCGgugUCGGUGCCCGGUACaugcucucggucaaaGCaGUCGGUGa -3' miRNA: 3'- -CGU---GGUCGCGGGUCGUG---------------CG-CGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 7178 | 0.71 | 0.170101 |
Target: 5'- gGCACCGGCgaguGCCCGGCcugcggACGCaCCGGg- -3' miRNA: 3'- -CGUGGUCG----CGGGUCG------UGCGcGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 27279 | 0.71 | 0.170101 |
Target: 5'- cCGCCuugAGcCGCCgCuGCACGCGCCGGa- -3' miRNA: 3'- cGUGG---UC-GCGG-GuCGUGCGCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 29940 | 0.71 | 0.179017 |
Target: 5'- cCGCCAcGCgGCCCGGuCGCG-GCUGGUGg -3' miRNA: 3'- cGUGGU-CG-CGGGUC-GUGCgCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 13441 | 0.71 | 0.183628 |
Target: 5'- cGCGCUAgGCGUgaccgUCGGCGCgGCGCUGGUGc -3' miRNA: 3'- -CGUGGU-CGCG-----GGUCGUG-CGCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 38737 | 0.71 | 0.183628 |
Target: 5'- cGUACCGGCggugGCCC-GC-CGCagGCCGGUGa -3' miRNA: 3'- -CGUGGUCG----CGGGuCGuGCG--CGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 9807 | 0.7 | 0.208287 |
Target: 5'- cGCGCCAcuacCGCCC-GCAC-CGCCGGg- -3' miRNA: 3'- -CGUGGUc---GCGGGuCGUGcGCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 55872 | 0.7 | 0.211959 |
Target: 5'- uCGCCgAGCGCCUcgccccgaccucggGGguCGCGCCGGg- -3' miRNA: 3'- cGUGG-UCGCGGG--------------UCguGCGCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 25947 | 0.7 | 0.21355 |
Target: 5'- aCGCCGGUGCCCGGC-C-CGCCGa-- -3' miRNA: 3'- cGUGGUCGCGGGUCGuGcGCGGCcac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 26799 | 0.71 | 0.169666 |
Target: 5'- aGCGCCGcCGCCCGGUugGCcgguaccGgCGGUGg -3' miRNA: 3'- -CGUGGUcGCGGGUCGugCG-------CgGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 12213 | 0.72 | 0.165794 |
Target: 5'- uGCACCGGCGCaCC-GCcCGCugGCCGGg- -3' miRNA: 3'- -CGUGGUCGCG-GGuCGuGCG--CGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 63689 | 0.72 | 0.152268 |
Target: 5'- cGCGCCGGggaucugcgccUGCCCAGCggggaucggggccuGCGCaGCCGGUa -3' miRNA: 3'- -CGUGGUC-----------GCGGGUCG--------------UGCG-CGGCCAc -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 45627 | 0.79 | 0.048429 |
Target: 5'- cCGCCGG-GCCgGGCAgCGCGCCGGUGc -3' miRNA: 3'- cGUGGUCgCGGgUCGU-GCGCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 2216 | 0.78 | 0.053601 |
Target: 5'- cGCACCgAGCGCCCGGCcucgccauuugucgGCGacaGCCGGUa -3' miRNA: 3'- -CGUGG-UCGCGGGUCG--------------UGCg--CGGCCAc -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 20659 | 0.75 | 0.102627 |
Target: 5'- gGCACCGGggccgaggaCGCCaugauguggucgcaCGGCACGCGCuCGGUGg -3' miRNA: 3'- -CGUGGUC---------GCGG--------------GUCGUGCGCG-GCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 48451 | 0.74 | 0.112038 |
Target: 5'- aGCGgCAGCGCguuCCAcCGCGCGCCGGg- -3' miRNA: 3'- -CGUgGUCGCG---GGUcGUGCGCGGCCac -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 6443 | 0.74 | 0.11813 |
Target: 5'- gGCACCGucGCGCUgauCGGCAgCGuCGCCGGUGc -3' miRNA: 3'- -CGUGGU--CGCGG---GUCGU-GC-GCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 23301 | 0.74 | 0.11813 |
Target: 5'- gGUAUCGGgGUCCGGCGCG-GUCGGUGu -3' miRNA: 3'- -CGUGGUCgCGGGUCGUGCgCGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 64015 | 0.73 | 0.127847 |
Target: 5'- cCACC-GCGCCCgaGGCGCGgcgagGCCGGUGa -3' miRNA: 3'- cGUGGuCGCGGG--UCGUGCg----CGGCCAC- -5' |
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23202 | 5' | -62.8 | NC_005259.1 | + | 27932 | 0.72 | 0.14953 |
Target: 5'- cGguUCGGCGaCCCAGCu--CGCCGGUGa -3' miRNA: 3'- -CguGGUCGC-GGGUCGugcGCGGCCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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