miRNA display CGI


Results 21 - 23 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23204 3' -57.5 NC_005259.1 + 17396 0.69 0.470827
Target:  5'- cACUGCcGCCCagCUacagagguUCUACGaGGCCGCa -3'
miRNA:   3'- -UGAUGaCGGGa-GG--------AGAUGCgUCGGCG- -5'
23204 3' -57.5 NC_005259.1 + 8352 0.67 0.563127
Target:  5'- cGCUGCUGCCgguaUCgCUCgGCGgCGGCCucgGCa -3'
miRNA:   3'- -UGAUGACGGg---AG-GAGaUGC-GUCGG---CG- -5'
23204 3' -57.5 NC_005259.1 + 784 0.66 0.638062
Target:  5'- gGCgGCUGCCCUCggUUGgGUGGCCa- -3'
miRNA:   3'- -UGaUGACGGGAGgaGAUgCGUCGGcg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.