miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23204 5' -60.4 NC_005259.1 + 59602 1.08 0.000548
Target:  5'- cUCACGGUCCCGCCGACAGGACAGGCAc -3'
miRNA:   3'- -AGUGCCAGGGCGGCUGUCCUGUCCGU- -5'
23204 5' -60.4 NC_005259.1 + 8944 0.73 0.193097
Target:  5'- aUCACGGUgggCgCGCCGu--GGACGGGCAc -3'
miRNA:   3'- -AGUGCCA---GgGCGGCuguCCUGUCCGU- -5'
23204 5' -60.4 NC_005259.1 + 7057 0.72 0.242026
Target:  5'- gCGCGaGaUCCUGUCGACGGG-CGGGCu -3'
miRNA:   3'- aGUGC-C-AGGGCGGCUGUCCuGUCCGu -5'
23204 5' -60.4 NC_005259.1 + 58504 0.71 0.254214
Target:  5'- cUCGCGGUCUaggGUCGACAcgaccuGACGGGCAa -3'
miRNA:   3'- -AGUGCCAGGg--CGGCUGUc-----CUGUCCGU- -5'
23204 5' -60.4 NC_005259.1 + 18341 0.71 0.266902
Target:  5'- uUCGUGGUCgaCGCCGACGGcGACAuguGGCAc -3'
miRNA:   3'- -AGUGCCAGg-GCGGCUGUC-CUGU---CCGU- -5'
23204 5' -60.4 NC_005259.1 + 23648 0.7 0.286888
Target:  5'- --uCGG-CCCGCCGACGGcGAC-GGCu -3'
miRNA:   3'- aguGCCaGGGCGGCUGUC-CUGuCCGu -5'
23204 5' -60.4 NC_005259.1 + 34885 0.69 0.345875
Target:  5'- cCGgGGUgCCuCgGGCAGGACGGGCc -3'
miRNA:   3'- aGUgCCAgGGcGgCUGUCCUGUCCGu -5'
23204 5' -60.4 NC_005259.1 + 37298 0.69 0.345875
Target:  5'- -gGCGGUgCCCGCCGGguCAGcaGACAGcGCGu -3'
miRNA:   3'- agUGCCA-GGGCGGCU--GUC--CUGUC-CGU- -5'
23204 5' -60.4 NC_005259.1 + 51808 0.69 0.353832
Target:  5'- --uCGGUCa-GCUcaGGCAGGGCGGGCAg -3'
miRNA:   3'- aguGCCAGggCGG--CUGUCCUGUCCGU- -5'
23204 5' -60.4 NC_005259.1 + 29945 0.69 0.370131
Target:  5'- aCGCGG-CCCGgucgCGGCugguGGGGCGGGCGg -3'
miRNA:   3'- aGUGCCaGGGCg---GCUG----UCCUGUCCGU- -5'
23204 5' -60.4 NC_005259.1 + 26279 0.68 0.395524
Target:  5'- gUCGcCGGUgCCGCCcucGACGGGuACGGGgAu -3'
miRNA:   3'- -AGU-GCCAgGGCGG---CUGUCC-UGUCCgU- -5'
23204 5' -60.4 NC_005259.1 + 66494 0.68 0.404235
Target:  5'- aUCAUGGgauuuccuUCCUGUCGGCGGGGC-GGUc -3'
miRNA:   3'- -AGUGCC--------AGGGCGGCUGUCCUGuCCGu -5'
23204 5' -60.4 NC_005259.1 + 15317 0.67 0.43108
Target:  5'- cCACGGUCUCGaCGGCGGuACuGGUAa -3'
miRNA:   3'- aGUGCCAGGGCgGCUGUCcUGuCCGU- -5'
23204 5' -60.4 NC_005259.1 + 26417 0.67 0.43108
Target:  5'- -gGCGGUgCCGCCGuagaacGCAccgccgagcGGGCGGGCc -3'
miRNA:   3'- agUGCCAgGGCGGC------UGU---------CCUGUCCGu -5'
23204 5' -60.4 NC_005259.1 + 58920 0.67 0.440258
Target:  5'- -gGCGGUCUuguCGUCGGCGGGcgcGguGGCAg -3'
miRNA:   3'- agUGCCAGG---GCGGCUGUCC---UguCCGU- -5'
23204 5' -60.4 NC_005259.1 + 66925 0.67 0.458941
Target:  5'- gCGCGGUgCUCGaCCGgggugaGCGGGACAccGGCGa -3'
miRNA:   3'- aGUGCCA-GGGC-GGC------UGUCCUGU--CCGU- -5'
23204 5' -60.4 NC_005259.1 + 2438 0.67 0.458941
Target:  5'- -gACGGUCCCGCCGAgaaAGGAaCAa--- -3'
miRNA:   3'- agUGCCAGGGCGGCUg--UCCU-GUccgu -5'
23204 5' -60.4 NC_005259.1 + 8616 0.67 0.468439
Target:  5'- uUCAUGGUCaCCGgagauCCGGCGagaauGGCGGGCAc -3'
miRNA:   3'- -AGUGCCAG-GGC-----GGCUGUc----CUGUCCGU- -5'
23204 5' -60.4 NC_005259.1 + 32352 0.66 0.487732
Target:  5'- aCGCgaGGUUgaugaCCGCCGuguAGGGCGGGCAc -3'
miRNA:   3'- aGUG--CCAG-----GGCGGCug-UCCUGUCCGU- -5'
23204 5' -60.4 NC_005259.1 + 50633 0.66 0.487732
Target:  5'- -aGCGGUCCaugcgauuaCGCCGcccuCGGGGCcauaGGGCAc -3'
miRNA:   3'- agUGCCAGG---------GCGGCu---GUCCUG----UCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.