miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23205 5' -55.2 NC_005259.1 + 17359 0.66 0.81346
Target:  5'- -aGGUCGGcGGCUcgGcGcUGGUCGUGGu -3'
miRNA:   3'- gaCUAGCCaCCGGaaC-C-ACUAGCGCC- -5'
23205 5' -55.2 NC_005259.1 + 65845 0.66 0.81346
Target:  5'- cCUGAUCagccauGGUGGCCUccgucugccccGGUGGg-GCGGu -3'
miRNA:   3'- -GACUAG------CCACCGGAa----------CCACUagCGCC- -5'
23205 5' -55.2 NC_005259.1 + 45486 0.66 0.775488
Target:  5'- uCUGGccgcUGGUGGCCUUGGUcgcUGUGGc -3'
miRNA:   3'- -GACUa---GCCACCGGAACCAcuaGCGCC- -5'
23205 5' -55.2 NC_005259.1 + 60927 0.67 0.745489
Target:  5'- aUGAgcuc-GGCCUUGGUGAUCGUc- -3'
miRNA:   3'- gACUagccaCCGGAACCACUAGCGcc -5'
23205 5' -55.2 NC_005259.1 + 35943 0.68 0.682819
Target:  5'- --uGUUGGUGGUgUUGGUGAaCGUGa -3'
miRNA:   3'- gacUAGCCACCGgAACCACUaGCGCc -5'
23205 5' -55.2 NC_005259.1 + 47320 0.69 0.650718
Target:  5'- cCUGAcCGGcGGCCUUGGUcagccccguGAUCGUuuugaGGa -3'
miRNA:   3'- -GACUaGCCaCCGGAACCA---------CUAGCG-----CC- -5'
23205 5' -55.2 NC_005259.1 + 12013 0.7 0.554502
Target:  5'- --aGUCGGUGGCCUUGuacggUGCGGg -3'
miRNA:   3'- gacUAGCCACCGGAACcacuaGCGCC- -5'
23205 5' -55.2 NC_005259.1 + 4483 0.72 0.47269
Target:  5'- -cGG-CGGUGGaCCaUGGUGAUCGCc- -3'
miRNA:   3'- gaCUaGCCACC-GGaACCACUAGCGcc -5'
23205 5' -55.2 NC_005259.1 + 58346 0.74 0.371235
Target:  5'- -aGGUCGGUGGCCUcGGgcacGUCGCa- -3'
miRNA:   3'- gaCUAGCCACCGGAaCCac--UAGCGcc -5'
23205 5' -55.2 NC_005259.1 + 63867 0.74 0.371235
Target:  5'- gUGGcCGGcUGGCCUUGcGUGggCGUGGa -3'
miRNA:   3'- gACUaGCC-ACCGGAAC-CACuaGCGCC- -5'
23205 5' -55.2 NC_005259.1 + 58443 1.1 0.00138
Target:  5'- gCUGAUCGGUGGCCUUGGUGAUCGCGGc -3'
miRNA:   3'- -GACUAGCCACCGGAACCACUAGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.