miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23206 5' -56.2 NC_005259.1 + 11435 0.66 0.692968
Target:  5'- -gGGAUGcUUGGgccgcUCGCugccGCCGGUGCCu -3'
miRNA:   3'- ugCCUAC-AACC-----AGCGc---UGGUCACGGu -5'
23206 5' -56.2 NC_005259.1 + 35938 0.66 0.745251
Target:  5'- uUGGAUGUUGGUgguguuggugaaCGUGACCguGGUcGCUg -3'
miRNA:   3'- uGCCUACAACCA------------GCGCUGG--UCA-CGGu -5'
23206 5' -56.2 NC_005259.1 + 11406 0.66 0.745251
Target:  5'- aGCGGuuuc-GGcUCGUGGCCGGUGCa- -3'
miRNA:   3'- -UGCCuacaaCC-AGCGCUGGUCACGgu -5'
23206 5' -56.2 NC_005259.1 + 58565 0.67 0.650057
Target:  5'- -gGGcgGUUGGgccggaUCGCGGCgCGGcUGCCGg -3'
miRNA:   3'- ugCCuaCAACC------AGCGCUG-GUC-ACGGU- -5'
23206 5' -56.2 NC_005259.1 + 25850 0.69 0.532443
Target:  5'- cGCGGAUG-UGGUacucgaugUGCgGGCguGUGCCAg -3'
miRNA:   3'- -UGCCUACaACCA--------GCG-CUGguCACGGU- -5'
23206 5' -56.2 NC_005259.1 + 57912 1.08 0.001157
Target:  5'- gACGGAUGUUGGUCGCGACCAGUGCCAg -3'
miRNA:   3'- -UGCCUACAACCAGCGCUGGUCACGGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.