Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23207 | 5' | -53.1 | NC_005259.1 | + | 1546 | 0.68 | 0.816621 |
Target: 5'- aUCGGGGccGCGUUcGGGGCggUGACGCUg -3' miRNA: 3'- -AGCCUC--UGCAAcUUCUGgaGCUGCGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 5598 | 0.67 | 0.874848 |
Target: 5'- gCGGAGugcUGUgugaguuUGAAGACCUCauaGCCg -3' miRNA: 3'- aGCCUCu--GCA-------ACUUCUGGAGcugCGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 13212 | 0.7 | 0.717381 |
Target: 5'- gCGGGGccaGCGgu--GGGCCUCGACcgGCCa -3' miRNA: 3'- aGCCUC---UGCaacuUCUGGAGCUG--CGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 14305 | 0.69 | 0.758665 |
Target: 5'- gUCGGuG-CGUaugGccGcCCUCGACGCCg -3' miRNA: 3'- -AGCCuCuGCAa--CuuCuGGAGCUGCGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 18237 | 0.72 | 0.599124 |
Target: 5'- cCGGAGACGgagauuucgagcUgcccgccgcgccUGAAccugagacGACCUCGACGCCc -3' miRNA: 3'- aGCCUCUGC------------A------------ACUU--------CUGGAGCUGCGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 20468 | 0.67 | 0.851648 |
Target: 5'- cUCGGAuGAcCGccGucGACCUCGACaCCg -3' miRNA: 3'- -AGCCU-CU-GCaaCuuCUGGAGCUGcGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 23739 | 0.68 | 0.797945 |
Target: 5'- aCGuGGGACGgc---GACCcCGACGCCc -3' miRNA: 3'- aGC-CUCUGCaacuuCUGGaGCUGCGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 24389 | 0.68 | 0.811094 |
Target: 5'- cCGGAGuACGUcGAAcgcaccgugcucaauGACCUCGGCGa- -3' miRNA: 3'- aGCCUC-UGCAaCUU---------------CUGGAGCUGCgg -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 28138 | 0.7 | 0.717381 |
Target: 5'- aCGuAGGCGaUGAGcugcccGGCCUCGACGCg -3' miRNA: 3'- aGCcUCUGCaACUU------CUGGAGCUGCGg -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 29908 | 0.71 | 0.642398 |
Target: 5'- -aGGGGugGcUGcccGAGACCaUCGACGCg -3' miRNA: 3'- agCCUCugCaAC---UUCUGG-AGCUGCGg -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 32853 | 0.73 | 0.524732 |
Target: 5'- cUCuGAGACGaacuuGACCUCGACGCg -3' miRNA: 3'- -AGcCUCUGCaacuuCUGGAGCUGCGg -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 34732 | 0.67 | 0.834547 |
Target: 5'- gUCGGGGAaacCGUUGguGAUCgu-GCGCCa -3' miRNA: 3'- -AGCCUCU---GCAACuuCUGGagcUGCGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 39554 | 0.7 | 0.689802 |
Target: 5'- ----cGACGUUGAGccggucguccggcccGACCUCGAUGCUg -3' miRNA: 3'- agccuCUGCAACUU---------------CUGGAGCUGCGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 41725 | 0.68 | 0.807372 |
Target: 5'- cCGGcGGCGggGAGGacaccGCCUCGAcaCGCUc -3' miRNA: 3'- aGCCuCUGCaaCUUC-----UGGAGCU--GCGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 42670 | 0.66 | 0.890383 |
Target: 5'- gCGGcuGCuGUUGgcGAUCUCGACcCCg -3' miRNA: 3'- aGCCucUG-CAACuuCUGGAGCUGcGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 44969 | 0.71 | 0.631569 |
Target: 5'- aUCGG-GAUGccGAGGGCCggugCGACuGCCg -3' miRNA: 3'- -AGCCuCUGCaaCUUCUGGa---GCUG-CGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 46533 | 0.66 | 0.904136 |
Target: 5'- gUCGGGGAuCGcc-GAGAUCUgGuCGCCg -3' miRNA: 3'- -AGCCUCU-GCaacUUCUGGAgCuGCGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 47797 | 0.66 | 0.890383 |
Target: 5'- gCGGuccGACGgUGAgucgcgAGACCUCGcGgGCCa -3' miRNA: 3'- aGCCu--CUGCaACU------UCUGGAGC-UgCGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 47900 | 0.66 | 0.904136 |
Target: 5'- gUCGGcu-CGUUGAGcGCCUUGAuggcguCGCCg -3' miRNA: 3'- -AGCCucuGCAACUUcUGGAGCU------GCGG- -5' |
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23207 | 5' | -53.1 | NC_005259.1 | + | 49645 | 0.67 | 0.859869 |
Target: 5'- gCGucGGCGaUGgcGGCCUCGauacGCGCCu -3' miRNA: 3'- aGCcuCUGCaACuuCUGGAGC----UGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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