miRNA display CGI


Results 41 - 46 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23208 5' -55.9 NC_005259.1 + 4479 0.69 0.554502
Target:  5'- cCAUCG-GCGGugGACCAUgGUGaUCGCCa -3'
miRNA:   3'- aGUAGCuCGCC--UUGGUA-CACgGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 3116 0.67 0.672152
Target:  5'- cCAUUGcGCGGcACCGUGggcagcggacgGCaCCGCCc -3'
miRNA:   3'- aGUAGCuCGCCuUGGUACa----------CG-GGCGG- -5'
23208 5' -55.9 NC_005259.1 + 2425 0.68 0.639973
Target:  5'- cUUGUCaGGGCGGGACg--GU-CCCGCCg -3'
miRNA:   3'- -AGUAG-CUCGCCUUGguaCAcGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 2099 0.67 0.69344
Target:  5'- uUCAUCG-GCGaGGCCAauUGgcacacGCUCGCCg -3'
miRNA:   3'- -AGUAGCuCGCcUUGGU--ACa-----CGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 393 0.67 0.69344
Target:  5'- uUCAagaCGGGCGaauACCAgcagcgcGUGCCCGUCg -3'
miRNA:   3'- -AGUa--GCUCGCcu-UGGUa------CACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 72 0.71 0.443583
Target:  5'- -uGUCaGGCGGGACCGU---CCCGCCg -3'
miRNA:   3'- agUAGcUCGCCUUGGUAcacGGGCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.