Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23208 | 5' | -55.9 | NC_005259.1 | + | 13671 | 0.66 | 0.724923 |
Target: 5'- aCAUCGAcggugugcucGUGGAcCCGUG-GCCgGUCg -3' miRNA: 3'- aGUAGCU----------CGCCUuGGUACaCGGgCGG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 10444 | 0.66 | 0.755612 |
Target: 5'- aCAUCGAGUGGcucgacGGCgGUGU-CCUGCg -3' miRNA: 3'- aGUAGCUCGCC------UUGgUACAcGGGCGg -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 33735 | 0.66 | 0.752587 |
Target: 5'- -uGUCGcGUGGAGCgGUGUGCacgagcacgaacacCCGCa -3' miRNA: 3'- agUAGCuCGCCUUGgUACACG--------------GGCGg -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 6657 | 0.66 | 0.735255 |
Target: 5'- -gGUCGAG-GGuguCCGUGacgcgcgagcUGCCCGCUu -3' miRNA: 3'- agUAGCUCgCCuu-GGUAC----------ACGGGCGG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 45545 | 0.66 | 0.735255 |
Target: 5'- ---gCGAGCGGGuugcucgccggGCCAcccuUGCCCGCg -3' miRNA: 3'- aguaGCUCGCCU-----------UGGUac--ACGGGCGg -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 30353 | 0.66 | 0.724923 |
Target: 5'- cUCAcCGuGUGGAcGCCGaucUGCCCGCUg -3' miRNA: 3'- -AGUaGCuCGCCU-UGGUac-ACGGGCGG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 51938 | 0.66 | 0.765616 |
Target: 5'- cUUGUCaGGCGGGACa--GU-CCCGCCg -3' miRNA: 3'- -AGUAGcUCGCCUUGguaCAcGGGCGG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 43950 | 0.66 | 0.775488 |
Target: 5'- gCGUCGgcgaugGGCGGGGCCGcc-GCCUGaCCg -3' miRNA: 3'- aGUAGC------UCGCCUUGGUacaCGGGC-GG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 50276 | 0.66 | 0.755612 |
Target: 5'- gUCGUCGguGGCGGGAacgUCGUGcacGCuCUGCCa -3' miRNA: 3'- -AGUAGC--UCGCCUU---GGUACa--CG-GGCGG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 20139 | 0.66 | 0.775488 |
Target: 5'- cCGUCGcgauGaCGGcAGCCG-GUGCCCugGCCa -3' miRNA: 3'- aGUAGCu---C-GCC-UUGGUaCACGGG--CGG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 32896 | 0.66 | 0.775488 |
Target: 5'- cCGggggCGAGgGuGAGCCAcccgGCCCGCUc -3' miRNA: 3'- aGUa---GCUCgC-CUUGGUaca-CGGGCGG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 393 | 0.67 | 0.69344 |
Target: 5'- uUCAagaCGGGCGaauACCAgcagcgcGUGCCCGUCg -3' miRNA: 3'- -AGUa--GCUCGCcu-UGGUa------CACGGGCGG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 43721 | 0.67 | 0.672152 |
Target: 5'- gCAUCGAGUcgauGGcGGCCAUGccGCCgaGCCg -3' miRNA: 3'- aGUAGCUCG----CC-UUGGUACa-CGGg-CGG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 3116 | 0.67 | 0.672152 |
Target: 5'- cCAUUGcGCGGcACCGUGggcagcggacgGCaCCGCCc -3' miRNA: 3'- aGUAGCuCGCCuUGGUACa----------CG-GGCGG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 62377 | 0.67 | 0.672152 |
Target: 5'- cUCAUCGAGUagcaGAuCCAaaccGCCCGCCu -3' miRNA: 3'- -AGUAGCUCGc---CUuGGUaca-CGGGCGG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 56078 | 0.67 | 0.672152 |
Target: 5'- cCGUCGAGCaG-AUCG-GUGCUCGUCg -3' miRNA: 3'- aGUAGCUCGcCuUGGUaCACGGGCGG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 6396 | 0.67 | 0.682819 |
Target: 5'- gUCAuuuUCGAGgCGGuGCCcugAUGUgGCCCGaCCu -3' miRNA: 3'- -AGU---AGCUC-GCCuUGG---UACA-CGGGC-GG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 34870 | 0.67 | 0.69344 |
Target: 5'- cUCGUCGGuGCcGGACCGggGUGCCUcgggcaggacggGCCg -3' miRNA: 3'- -AGUAGCU-CGcCUUGGUa-CACGGG------------CGG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 65889 | 0.67 | 0.714503 |
Target: 5'- -aAUCG-GCGGGACg--GU-CCCGCCg -3' miRNA: 3'- agUAGCuCGCCUUGguaCAcGGGCGG- -5' |
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23208 | 5' | -55.9 | NC_005259.1 | + | 54682 | 0.67 | 0.714503 |
Target: 5'- cUCggCGAGCGaGACCGUGUcgaggcgggugGCCUcaGCCu -3' miRNA: 3'- -AGuaGCUCGCcUUGGUACA-----------CGGG--CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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