miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23208 5' -55.9 NC_005259.1 + 72 0.71 0.443583
Target:  5'- -uGUCaGGCGGGACCGU---CCCGCCg -3'
miRNA:   3'- agUAGcUCGCCUUGGUAcacGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 393 0.67 0.69344
Target:  5'- uUCAagaCGGGCGaauACCAgcagcgcGUGCCCGUCg -3'
miRNA:   3'- -AGUa--GCUCGCcu-UGGUa------CACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 2099 0.67 0.69344
Target:  5'- uUCAUCG-GCGaGGCCAauUGgcacacGCUCGCCg -3'
miRNA:   3'- -AGUAGCuCGCcUUGGU--ACa-----CGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 2425 0.68 0.639973
Target:  5'- cUUGUCaGGGCGGGACg--GU-CCCGCCg -3'
miRNA:   3'- -AGUAG-CUCGCCUUGguaCAcGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 3116 0.67 0.672152
Target:  5'- cCAUUGcGCGGcACCGUGggcagcggacgGCaCCGCCc -3'
miRNA:   3'- aGUAGCuCGCCuUGGUACa----------CG-GGCGG- -5'
23208 5' -55.9 NC_005259.1 + 4479 0.69 0.554502
Target:  5'- cCAUCG-GCGGugGACCAUgGUGaUCGCCa -3'
miRNA:   3'- aGUAGCuCGCC--UUGGUA-CACgGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 6396 0.67 0.682819
Target:  5'- gUCAuuuUCGAGgCGGuGCCcugAUGUgGCCCGaCCu -3'
miRNA:   3'- -AGU---AGCUC-GCCuUGG---UACA-CGGGC-GG- -5'
23208 5' -55.9 NC_005259.1 + 6657 0.66 0.735255
Target:  5'- -gGUCGAG-GGuguCCGUGacgcgcgagcUGCCCGCUu -3'
miRNA:   3'- agUAGCUCgCCuu-GGUAC----------ACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 10444 0.66 0.755612
Target:  5'- aCAUCGAGUGGcucgacGGCgGUGU-CCUGCg -3'
miRNA:   3'- aGUAGCUCGCC------UUGgUACAcGGGCGg -5'
23208 5' -55.9 NC_005259.1 + 11797 0.68 0.61847
Target:  5'- aCAUCGGGCGcGACCcgcuUGaGCUCGUCg -3'
miRNA:   3'- aGUAGCUCGCcUUGGu---ACaCGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 13671 0.66 0.724923
Target:  5'- aCAUCGAcggugugcucGUGGAcCCGUG-GCCgGUCg -3'
miRNA:   3'- aGUAGCU----------CGCCUuGGUACaCGGgCGG- -5'
23208 5' -55.9 NC_005259.1 + 16430 0.72 0.424748
Target:  5'- cCGUCGAGCGGcccaAACCGg--GCaCCGUCg -3'
miRNA:   3'- aGUAGCUCGCC----UUGGUacaCG-GGCGG- -5'
23208 5' -55.9 NC_005259.1 + 17314 0.71 0.462878
Target:  5'- aCGcCGAGCGGuACCccgaggGUGUGCCgGUCa -3'
miRNA:   3'- aGUaGCUCGCCuUGG------UACACGGgCGG- -5'
23208 5' -55.9 NC_005259.1 + 18748 0.68 0.61847
Target:  5'- gUCGUCG-GUGGugcucgaCAUG-GCCUGCCa -3'
miRNA:   3'- -AGUAGCuCGCCuug----GUACaCGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 20139 0.66 0.775488
Target:  5'- cCGUCGcgauGaCGGcAGCCG-GUGCCCugGCCa -3'
miRNA:   3'- aGUAGCu---C-GCC-UUGGUaCACGGG--CGG- -5'
23208 5' -55.9 NC_005259.1 + 23613 0.67 0.704005
Target:  5'- cCcgCGuGGCGGcAGCCAgacggcucggugUGguuucgGCCCGCCg -3'
miRNA:   3'- aGuaGC-UCGCC-UUGGU------------ACa-----CGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 27400 0.74 0.330287
Target:  5'- -uGUCGgcagcGGCGGcAGCUcgGUGCCCGCg -3'
miRNA:   3'- agUAGC-----UCGCC-UUGGuaCACGGGCGg -5'
23208 5' -55.9 NC_005259.1 + 30353 0.66 0.724923
Target:  5'- cUCAcCGuGUGGAcGCCGaucUGCCCGCUg -3'
miRNA:   3'- -AGUaGCuCGCCU-UGGUac-ACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 32309 0.71 0.47269
Target:  5'- ----aGAGCcuuGAGCCGcaGUGCCCGCCa -3'
miRNA:   3'- aguagCUCGc--CUUGGUa-CACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 32896 0.66 0.775488
Target:  5'- cCGggggCGAGgGuGAGCCAcccgGCCCGCUc -3'
miRNA:   3'- aGUa---GCUCgC-CUUGGUaca-CGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.