miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23208 5' -55.9 NC_005259.1 + 20139 0.66 0.775488
Target:  5'- cCGUCGcgauGaCGGcAGCCG-GUGCCCugGCCa -3'
miRNA:   3'- aGUAGCu---C-GCC-UUGGUaCACGGG--CGG- -5'
23208 5' -55.9 NC_005259.1 + 40124 0.69 0.542957
Target:  5'- cUCGUgGAauugGCGGGcgagcucGCCGUcgguugucgGUGCCCGCCc -3'
miRNA:   3'- -AGUAgCU----CGCCU-------UGGUA---------CACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 4479 0.69 0.554502
Target:  5'- cCAUCG-GCGGugGACCAUgGUGaUCGCCa -3'
miRNA:   3'- aGUAGCuCGCC--UUGGUA-CACgGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 37606 0.68 0.608804
Target:  5'- aCGUCGGGCcgagcucgcugaugGGGAUgAUGUGCugcccgaugaccgcaCCGCCg -3'
miRNA:   3'- aGUAGCUCG--------------CCUUGgUACACG---------------GGCGG- -5'
23208 5' -55.9 NC_005259.1 + 11797 0.68 0.61847
Target:  5'- aCAUCGGGCGcGACCcgcuUGaGCUCGUCg -3'
miRNA:   3'- aGUAGCUCGCcUUGGu---ACaCGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 18748 0.68 0.61847
Target:  5'- gUCGUCG-GUGGugcucgaCAUG-GCCUGCCa -3'
miRNA:   3'- -AGUAGCuCGCCuug----GUACaCGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 37846 0.68 0.61847
Target:  5'- gCGUCGAGCcGAugUAgaccuUGCCCGCg -3'
miRNA:   3'- aGUAGCUCGcCUugGUac---ACGGGCGg -5'
23208 5' -55.9 NC_005259.1 + 57130 0.68 0.62922
Target:  5'- cCAUCG-GCGGGACCgagcaguaGUG-GCCCucccacguGCCg -3'
miRNA:   3'- aGUAGCuCGCCUUGG--------UACaCGGG--------CGG- -5'
23208 5' -55.9 NC_005259.1 + 2425 0.68 0.639973
Target:  5'- cUUGUCaGGGCGGGACg--GU-CCCGCCg -3'
miRNA:   3'- -AGUAG-CUCGCCUUGguaCAcGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 48598 0.71 0.482605
Target:  5'- cUUGUCGAGCGcGGgcgcuaccGCCGUGcgcacUGCCuCGCCg -3'
miRNA:   3'- -AGUAGCUCGC-CU--------UGGUAC-----ACGG-GCGG- -5'
23208 5' -55.9 NC_005259.1 + 32309 0.71 0.47269
Target:  5'- ----aGAGCcuuGAGCCGcaGUGCCCGCCa -3'
miRNA:   3'- aguagCUCGc--CUUGGUa-CACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 17314 0.71 0.462878
Target:  5'- aCGcCGAGCGGuACCccgaggGUGUGCCgGUCa -3'
miRNA:   3'- aGUaGCUCGCCuUGG------UACACGGgCGG- -5'
23208 5' -55.9 NC_005259.1 + 53624 0.75 0.271896
Target:  5'- gCGUCGAGCGGuGCCGU-UGgCCGCUu -3'
miRNA:   3'- aGUAGCUCGCCuUGGUAcACgGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 36317 0.74 0.292051
Target:  5'- ---gCGGGCGGGAUCAUGUuggcaaacgaaauGCCCGCg -3'
miRNA:   3'- aguaGCUCGCCUUGGUACA-------------CGGGCGg -5'
23208 5' -55.9 NC_005259.1 + 27400 0.74 0.330287
Target:  5'- -uGUCGgcagcGGCGGcAGCUcgGUGCCCGCg -3'
miRNA:   3'- agUAGC-----UCGCC-UUGGuaCACGGGCGg -5'
23208 5' -55.9 NC_005259.1 + 65155 0.73 0.338204
Target:  5'- -aGUCGAaaCGG-GCCAUG-GCCCGCCg -3'
miRNA:   3'- agUAGCUc-GCCuUGGUACaCGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 67158 0.73 0.371235
Target:  5'- cUUGUCGAugGUGGcGGCCAUGccgccgaugaUGCCCGCCu -3'
miRNA:   3'- -AGUAGCU--CGCC-UUGGUAC----------ACGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 16430 0.72 0.424748
Target:  5'- cCGUCGAGCGGcccaAACCGg--GCaCCGUCg -3'
miRNA:   3'- aGUAGCUCGCC----UUGGUacaCG-GGCGG- -5'
23208 5' -55.9 NC_005259.1 + 72 0.71 0.443583
Target:  5'- -uGUCaGGCGGGACCGU---CCCGCCg -3'
miRNA:   3'- agUAGcUCGCCUUGGUAcacGGGCGG- -5'
23208 5' -55.9 NC_005259.1 + 49084 0.71 0.443583
Target:  5'- aUCGcUCGAG-GGugUCAUGgccGCCCGCCg -3'
miRNA:   3'- -AGU-AGCUCgCCuuGGUACa--CGGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.