miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23209 3' -52.7 NC_005259.1 + 1350 0.76 0.366717
Target:  5'- gCAACGgUGCCUacugGGCCG-CUCGCCGCg -3'
miRNA:   3'- -GUUGCaGUGGAa---CUGGCuGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 1813 0.66 0.889181
Target:  5'- cCGACGcgagcaaUC-CCgccGACCuGCUCGCCGCu -3'
miRNA:   3'- -GUUGC-------AGuGGaa-CUGGcUGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 2046 0.66 0.910374
Target:  5'- gGGCgGUCACCggcACCGAgaCACgGCg -3'
miRNA:   3'- gUUG-CAGUGGaacUGGCUgaGUGgCG- -5'
23209 3' -52.7 NC_005259.1 + 3068 0.68 0.79633
Target:  5'- uCGACGg-GCCgaGGCCGACaagagaGCCGCg -3'
miRNA:   3'- -GUUGCagUGGaaCUGGCUGag----UGGCG- -5'
23209 3' -52.7 NC_005259.1 + 5192 0.69 0.746292
Target:  5'- cCGACGcCGCC---GCCaaGCUCACCGCg -3'
miRNA:   3'- -GUUGCaGUGGaacUGGc-UGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 6096 0.69 0.766728
Target:  5'- uCAACGccgagaUCGCCgaGGCCGAggcCGCCGCu -3'
miRNA:   3'- -GUUGC------AGUGGaaCUGGCUga-GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 6391 0.66 0.899754
Target:  5'- uCAACGUCAuuuucgaggcggugcCCUgaugUGGcCCGAcCUCGCCGa -3'
miRNA:   3'- -GUUGCAGU---------------GGA----ACU-GGCU-GAGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 6462 0.68 0.824411
Target:  5'- gCAGCGUCGCCggugcccUGuACCcGCUCAC-GCg -3'
miRNA:   3'- -GUUGCAGUGGa------AC-UGGcUGAGUGgCG- -5'
23209 3' -52.7 NC_005259.1 + 6933 0.76 0.366717
Target:  5'- --cCGcCGCCUUGagGCCGAgCUCGCCGCc -3'
miRNA:   3'- guuGCaGUGGAAC--UGGCU-GAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 7638 0.67 0.859022
Target:  5'- aCAcCGUCGCCgaGuuCGAC-CGCCGUc -3'
miRNA:   3'- -GUuGCAGUGGaaCugGCUGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 8894 0.7 0.71481
Target:  5'- gAGCGUCACgCUcGGCCugcuGACggGCCGCg -3'
miRNA:   3'- gUUGCAGUG-GAaCUGG----CUGagUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 9523 0.68 0.815237
Target:  5'- -cGCGUCgACCgccGCCGGgUCACCGg -3'
miRNA:   3'- guUGCAG-UGGaacUGGCUgAGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 9587 0.67 0.867111
Target:  5'- uCAACGUCGUCggucUGGCCGuagagCACCGUg -3'
miRNA:   3'- -GUUGCAGUGGa---ACUGGCuga--GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 11043 0.7 0.73171
Target:  5'- gGugGUCACCgcaugacgugccGAUCGGCUCAgCGUg -3'
miRNA:   3'- gUugCAGUGGaa----------CUGGCUGAGUgGCG- -5'
23209 3' -52.7 NC_005259.1 + 12035 0.66 0.916663
Target:  5'- gGGCGgcaaccgguacUCACCgaGGCCGAgCUCugCGg -3'
miRNA:   3'- gUUGC-----------AGUGGaaCUGGCU-GAGugGCg -5'
23209 3' -52.7 NC_005259.1 + 13218 0.74 0.459305
Target:  5'- cCAGCGguggGCCUcGACCGGC-CACCGUg -3'
miRNA:   3'- -GUUGCag--UGGAaCUGGCUGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 13447 0.69 0.746292
Target:  5'- aGGCGUgACCgucGGCgCGgcgcugguGCUCACCGCg -3'
miRNA:   3'- gUUGCAgUGGaa-CUG-GC--------UGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 14895 0.69 0.776746
Target:  5'- gUAugGUCaaGCCaaGACC--CUCACCGCa -3'
miRNA:   3'- -GUugCAG--UGGaaCUGGcuGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 15289 0.66 0.903817
Target:  5'- aAGCGaucuaCACC---GCCGAcCUCGCCGCc -3'
miRNA:   3'- gUUGCa----GUGGaacUGGCU-GAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 17344 0.69 0.746292
Target:  5'- uCAACGUCGCCgucGAggucggCGGCUCGgCGCu -3'
miRNA:   3'- -GUUGCAGUGGaa-CUg-----GCUGAGUgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.