miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23209 3' -52.7 NC_005259.1 + 58181 0.66 0.916663
Target:  5'- uCGACG-CACguCUUGACCGccguggGCUUGCCGg -3'
miRNA:   3'- -GUUGCaGUG--GAACUGGC------UGAGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 50409 0.7 0.71481
Target:  5'- gAGCGcgccggUGCCUUGACCGGCUCggGCaGCg -3'
miRNA:   3'- gUUGCa-----GUGGAACUGGCUGAG--UGgCG- -5'
23209 3' -52.7 NC_005259.1 + 11043 0.7 0.73171
Target:  5'- gGugGUCACCgcaugacgugccGAUCGGCUCAgCGUg -3'
miRNA:   3'- gUugCAGUGGaa----------CUGGCUGAGUgGCG- -5'
23209 3' -52.7 NC_005259.1 + 13447 0.69 0.746292
Target:  5'- aGGCGUgACCgucGGCgCGgcgcugguGCUCACCGCg -3'
miRNA:   3'- gUUGCAgUGGaa-CUG-GC--------UGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 17344 0.69 0.746292
Target:  5'- uCAACGUCGCCgucGAggucggCGGCUCGgCGCu -3'
miRNA:   3'- -GUUGCAGUGGaa-CUg-----GCUGAGUgGCG- -5'
23209 3' -52.7 NC_005259.1 + 30706 0.69 0.746292
Target:  5'- gAGCGUguUgUUGccGCCGACgCGCCGCa -3'
miRNA:   3'- gUUGCAguGgAAC--UGGCUGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 5192 0.69 0.746292
Target:  5'- cCGACGcCGCC---GCCaaGCUCACCGCg -3'
miRNA:   3'- -GUUGCaGUGGaacUGGc-UGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 20611 0.69 0.756572
Target:  5'- gCGGCG-CACCgcGACCGugUCGauGCg -3'
miRNA:   3'- -GUUGCaGUGGaaCUGGCugAGUggCG- -5'
23209 3' -52.7 NC_005259.1 + 6096 0.69 0.766728
Target:  5'- uCAACGccgagaUCGCCgaGGCCGAggcCGCCGCu -3'
miRNA:   3'- -GUUGC------AGUGGaaCUGGCUga-GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 8894 0.7 0.71481
Target:  5'- gAGCGUCACgCUcGGCCugcuGACggGCCGCg -3'
miRNA:   3'- gUUGCAGUG-GAaCUGG----CUGagUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 40247 0.71 0.643417
Target:  5'- uCGAUGUCGuCCUccacagugcccauagUGACaCGAacaCUCACCGCg -3'
miRNA:   3'- -GUUGCAGU-GGA---------------ACUG-GCU---GAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 36437 0.71 0.640139
Target:  5'- gCAGCGUCGCCgaGGUCGACcgcgucgagggugagCACCGCc -3'
miRNA:   3'- -GUUGCAGUGGaaCUGGCUGa--------------GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 1350 0.76 0.366717
Target:  5'- gCAACGgUGCCUacugGGCCG-CUCGCCGCg -3'
miRNA:   3'- -GUUGCaGUGGAa---CUGGCuGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 6933 0.76 0.366717
Target:  5'- --cCGcCGCCUUGagGCCGAgCUCGCCGCc -3'
miRNA:   3'- guuGCaGUGGAAC--UGGCU-GAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 29454 0.76 0.401283
Target:  5'- cCAGCGUgACCUUGccgcCCGGCUCggcauggACCGCc -3'
miRNA:   3'- -GUUGCAgUGGAACu---GGCUGAG-------UGGCG- -5'
23209 3' -52.7 NC_005259.1 + 13218 0.74 0.459305
Target:  5'- cCAGCGguggGCCUcGACCGGC-CACCGUg -3'
miRNA:   3'- -GUUGCag--UGGAaCUGGCUGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 44616 0.74 0.493518
Target:  5'- uUAGCGUugccgccguagguugCGCCUUGACCGguGC-CGCCGCc -3'
miRNA:   3'- -GUUGCA---------------GUGGAACUGGC--UGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 31803 0.73 0.552205
Target:  5'- --uCGUCAUCgagcucGACCGACccCACCGCg -3'
miRNA:   3'- guuGCAGUGGaa----CUGGCUGa-GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 32872 0.72 0.5737
Target:  5'- uCGACGcgCGCggUGAUCGAUUCACCGg -3'
miRNA:   3'- -GUUGCa-GUGgaACUGGCUGAGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 48497 0.72 0.584522
Target:  5'- uCGACG-CGCUUgagGGCCgcGACUUGCCGCa -3'
miRNA:   3'- -GUUGCaGUGGAa--CUGG--CUGAGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.