miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23209 3' -52.7 NC_005259.1 + 47486 0.66 0.896992
Target:  5'- -cGCGUCACCgaGGCgCGGCaggaacaCGCUGCc -3'
miRNA:   3'- guUGCAGUGGaaCUG-GCUGa------GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 17728 0.66 0.889904
Target:  5'- cCGACG-CACCgUGGCUG-CUCGaCGCg -3'
miRNA:   3'- -GUUGCaGUGGaACUGGCuGAGUgGCG- -5'
23209 3' -52.7 NC_005259.1 + 47275 0.66 0.889904
Target:  5'- cCAGCG-CACCgagcaGACCGcCgUCGCCGg -3'
miRNA:   3'- -GUUGCaGUGGaa---CUGGCuG-AGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 43882 0.66 0.889904
Target:  5'- gCAGCGUUGCC---GCCGACaUUGcCCGCg -3'
miRNA:   3'- -GUUGCAGUGGaacUGGCUG-AGU-GGCG- -5'
23209 3' -52.7 NC_005259.1 + 36216 0.66 0.889904
Target:  5'- aCAGCGcgaugccgagCACCUUGGCCaGCgcgagCGCCuGCg -3'
miRNA:   3'- -GUUGCa---------GUGGAACUGGcUGa----GUGG-CG- -5'
23209 3' -52.7 NC_005259.1 + 1813 0.66 0.889181
Target:  5'- cCGACGcgagcaaUC-CCgccGACCuGCUCGCCGCu -3'
miRNA:   3'- -GUUGC-------AGuGGaa-CUGGcUGAGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 37032 0.66 0.882558
Target:  5'- aCAAUGUCgAUCUUGguGCCcGC-CACCGCc -3'
miRNA:   3'- -GUUGCAG-UGGAAC--UGGcUGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 60183 0.66 0.882558
Target:  5'- gAACGcCugCUcGACCGACcgggccacgaucUCGCCGa -3'
miRNA:   3'- gUUGCaGugGAaCUGGCUG------------AGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 63850 0.67 0.874958
Target:  5'- aAGCGcgUACCggcgaggUGGCCGGCUgGCCuuGCg -3'
miRNA:   3'- gUUGCa-GUGGa------ACUGGCUGAgUGG--CG- -5'
23209 3' -52.7 NC_005259.1 + 44405 0.67 0.874185
Target:  5'- -cACGUCggugcccGCC-UGACCGGCagCGCCGa -3'
miRNA:   3'- guUGCAG-------UGGaACUGGCUGa-GUGGCg -5'
23209 3' -52.7 NC_005259.1 + 9587 0.67 0.867111
Target:  5'- uCAACGUCGUCggucUGGCCGuagagCACCGUg -3'
miRNA:   3'- -GUUGCAGUGGa---ACUGGCuga--GUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 53218 0.67 0.859022
Target:  5'- -cGCGUCGCCcgcgcccugcUUGagguucgcgccGCCGACaccgUCGCCGCc -3'
miRNA:   3'- guUGCAGUGG----------AAC-----------UGGCUG----AGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 22524 0.67 0.859022
Target:  5'- gCAcCGUCGCCggUGAuuuccagcaguCCGAcCUCGCCGa -3'
miRNA:   3'- -GUuGCAGUGGa-ACU-----------GGCU-GAGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 7638 0.67 0.859022
Target:  5'- aCAcCGUCGCCgaGuuCGAC-CGCCGUc -3'
miRNA:   3'- -GUuGCAGUGGaaCugGCUGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 58948 0.67 0.8507
Target:  5'- gCAGCGUCgGCCUUGGCCaGcaggucgggcaGCUCGuCgGCg -3'
miRNA:   3'- -GUUGCAG-UGGAACUGG-C-----------UGAGU-GgCG- -5'
23209 3' -52.7 NC_005259.1 + 62125 0.67 0.842152
Target:  5'- ---aGUCACCgaggUGAUCGuCUCgaccaccucagGCCGCa -3'
miRNA:   3'- guugCAGUGGa---ACUGGCuGAG-----------UGGCG- -5'
23209 3' -52.7 NC_005259.1 + 52568 0.67 0.841285
Target:  5'- aCAugGUCgACCg-GACCGGCcugagcgUCGCCGa -3'
miRNA:   3'- -GUugCAG-UGGaaCUGGCUG-------AGUGGCg -5'
23209 3' -52.7 NC_005259.1 + 53737 0.68 0.833386
Target:  5'- uGAUGUCGCCgggUGuCC-ACUCgguGCCGCc -3'
miRNA:   3'- gUUGCAGUGGa--ACuGGcUGAG---UGGCG- -5'
23209 3' -52.7 NC_005259.1 + 27251 0.68 0.833386
Target:  5'- uCGAgGUgACCcgcguagGACCGAUaCGCCGCc -3'
miRNA:   3'- -GUUgCAgUGGaa-----CUGGCUGaGUGGCG- -5'
23209 3' -52.7 NC_005259.1 + 31123 0.68 0.833386
Target:  5'- cCGAUGUCGCCgaUGAUCGGgaUGCUGCc -3'
miRNA:   3'- -GUUGCAGUGGa-ACUGGCUgaGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.