miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23209 5' -57 NC_005259.1 + 39928 0.66 0.713832
Target:  5'- gGGCcGCGucgaGGuCGUCCUUGGUGAc- -3'
miRNA:   3'- gCUGcCGCua--CC-GCAGGAGCCACUug -5'
23209 5' -57 NC_005259.1 + 53921 0.66 0.707614
Target:  5'- cCGACGGgcaGAucguUGGCGUCgaccagcguuucccaCcCGGUGAACa -3'
miRNA:   3'- -GCUGCCg--CU----ACCGCAG---------------GaGCCACUUG- -5'
23209 5' -57 NC_005259.1 + 11776 0.66 0.682515
Target:  5'- uCGACGGCGAgGGaGUCCcacacaUCGGgcgcgacccgcuUGAGCu -3'
miRNA:   3'- -GCUGCCGCUaCCgCAGG------AGCC------------ACUUG- -5'
23209 5' -57 NC_005259.1 + 53731 0.67 0.649734
Target:  5'- uGAUGGUGAUgucgccgGGUGUCCacUCGGUgccgccGAACa -3'
miRNA:   3'- gCUGCCGCUA-------CCGCAGG--AGCCA------CUUG- -5'
23209 5' -57 NC_005259.1 + 29009 0.67 0.640176
Target:  5'- aGAuCGGCGAaugcGGUGUCUgCGGUcGAACc -3'
miRNA:   3'- gCU-GCCGCUa---CCGCAGGaGCCA-CUUG- -5'
23209 5' -57 NC_005259.1 + 61596 0.69 0.54532
Target:  5'- gGugGGcCGGUGGgGUCggCGGgGAACa -3'
miRNA:   3'- gCugCC-GCUACCgCAGgaGCCaCUUG- -5'
23209 5' -57 NC_005259.1 + 41194 0.69 0.54532
Target:  5'- uCGAUGGUGAUGcCGUUgUCGGUGu-- -3'
miRNA:   3'- -GCUGCCGCUACcGCAGgAGCCACuug -5'
23209 5' -57 NC_005259.1 + 41635 0.69 0.544285
Target:  5'- uGGUGGCGGUGccggucuGCGggCgCUCGGUGAGCg -3'
miRNA:   3'- gCUGCCGCUAC-------CGCa-G-GAGCCACUUG- -5'
23209 5' -57 NC_005259.1 + 37063 0.69 0.535002
Target:  5'- aCGGCGGCGGUGuccaCGUCCacgcaccggCGGUGGu- -3'
miRNA:   3'- -GCUGCCGCUACc---GCAGGa--------GCCACUug -5'
23209 5' -57 NC_005259.1 + 27390 0.69 0.524754
Target:  5'- cCGGCGGCGGUgucggcagcGGCGgcagCUCGGUGcccGCg -3'
miRNA:   3'- -GCUGCCGCUA---------CCGCag--GAGCCACu--UG- -5'
23209 5' -57 NC_005259.1 + 49645 0.7 0.455421
Target:  5'- gCGuCGGCGAUGGCGgCCUCGa----- -3'
miRNA:   3'- -GCuGCCGCUACCGCaGGAGCcacuug -5'
23209 5' -57 NC_005259.1 + 8370 0.7 0.445916
Target:  5'- uCGGCGGCGGccucggcaucGGCGagagCCUCGGcGAGCc -3'
miRNA:   3'- -GCUGCCGCUa---------CCGCa---GGAGCCaCUUG- -5'
23209 5' -57 NC_005259.1 + 38736 0.71 0.418085
Target:  5'- cCGuacCGGCGGUGGCccgCCgcaggcCGGUGAGCu -3'
miRNA:   3'- -GCu--GCCGCUACCGca-GGa-----GCCACUUG- -5'
23209 5' -57 NC_005259.1 + 3995 0.73 0.303264
Target:  5'- gCGAUGGCGGgccGCGUCCccCGGuUGAGCa -3'
miRNA:   3'- -GCUGCCGCUac-CGCAGGa-GCC-ACUUG- -5'
23209 5' -57 NC_005259.1 + 57534 1.1 0.000839
Target:  5'- cCGACGGCGAUGGCGUCCUCGGUGAACa -3'
miRNA:   3'- -GCUGCCGCUACCGCAGGAGCCACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.