Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23210 | 3' | -54.2 | NC_005259.1 | + | 68116 | 0.66 | 0.865052 |
Target: 5'- aGuUCGGGUCGAGagcaGCGgcgagcUCGgcAGGAUGc -3' miRNA: 3'- aCuAGCCCAGCUUg---CGC------AGC--UCCUAC- -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 56806 | 0.66 | 0.865052 |
Target: 5'- aGAUCgGGGUCGGuggccacccauuGCGCGccuaUGuGGAUGa -3' miRNA: 3'- aCUAG-CCCAGCU------------UGCGCa---GCuCCUAC- -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 39917 | 0.66 | 0.857002 |
Target: 5'- cGAUCc-GUCGAGggcCGCGUCGAGGu-- -3' miRNA: 3'- aCUAGccCAGCUU---GCGCAGCUCCuac -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 54076 | 0.66 | 0.848726 |
Target: 5'- cUGcgUGaGGUCGGugGCGUCGcgcaucaccGGGGUc -3' miRNA: 3'- -ACuaGC-CCAGCUugCGCAGC---------UCCUAc -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 45458 | 0.67 | 0.804235 |
Target: 5'- uUGAUCGGGgugcCGAACGgGcCGAGcuucuggccgcuGGUGg -3' miRNA: 3'- -ACUAGCCCa---GCUUGCgCaGCUC------------CUAC- -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 67915 | 0.68 | 0.765468 |
Target: 5'- cGG-CGaGGUCaAGCGCGUaggucgCGAGGAUGa -3' miRNA: 3'- aCUaGC-CCAGcUUGCGCA------GCUCCUAC- -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 397 | 0.68 | 0.765468 |
Target: 5'- aGA-CGGG-CGAauaccagcaGCGCGugcccgUCGAGGAUGa -3' miRNA: 3'- aCUaGCCCaGCU---------UGCGC------AGCUCCUAC- -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 40053 | 0.68 | 0.745251 |
Target: 5'- gUGAUCGGGUCGGuCGCGaUGAcccauGGGc- -3' miRNA: 3'- -ACUAGCCCAGCUuGCGCaGCU-----CCUac -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 51653 | 0.69 | 0.702522 |
Target: 5'- cGAaCGGGUugccgcgCGGGCGCGUCGGGcacgggcgcgcGAUGg -3' miRNA: 3'- aCUaGCCCA-------GCUUGCGCAGCUC-----------CUAC- -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 53012 | 0.69 | 0.692968 |
Target: 5'- cGAcUGGGcgcugCGGugGCGUCGAGGcaucGUGa -3' miRNA: 3'- aCUaGCCCa----GCUugCGCAGCUCC----UAC- -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 68299 | 0.69 | 0.660833 |
Target: 5'- -cAUCGGGaUCGGGCGCGUCcggcgacGGGAUc -3' miRNA: 3'- acUAGCCC-AGCUUGCGCAGc------UCCUAc -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 32042 | 0.7 | 0.61767 |
Target: 5'- cGcAUCGGGUUgcugagGAACGCGUCGAacGAUGc -3' miRNA: 3'- aC-UAGCCCAG------CUUGCGCAGCUc-CUAC- -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 63279 | 0.71 | 0.57363 |
Target: 5'- uUGGUCGGGUCGAugccuucACGUG-CGAgcagcggggucaGGAUGu -3' miRNA: 3'- -ACUAGCCCAGCU-------UGCGCaGCU------------CCUAC- -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 46986 | 0.72 | 0.501498 |
Target: 5'- aUGAUCGGGcCGAggguGCGCcacgCGAGGAa- -3' miRNA: 3'- -ACUAGCCCaGCU----UGCGca--GCUCCUac -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 42037 | 0.73 | 0.451801 |
Target: 5'- -uGUCGGGUCGAcuGCGCuGUCcucGGGGUGg -3' miRNA: 3'- acUAGCCCAGCU--UGCG-CAGc--UCCUAC- -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 63231 | 0.75 | 0.369696 |
Target: 5'- aGAUCgGGGUCGcuggucagacccGACGCGUCguaccaGAGGAUGu -3' miRNA: 3'- aCUAG-CCCAGC------------UUGCGCAG------CUCCUAC- -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 10648 | 0.79 | 0.204009 |
Target: 5'- uUGGccUCGcGGUCGAGCGCcUUGAGGAUGg -3' miRNA: 3'- -ACU--AGC-CCAGCUUGCGcAGCUCCUAC- -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 67422 | 0.8 | 0.171369 |
Target: 5'- -cAUCGGGgugccgggcucacgcUUGAGCGCGUCGGGGAUGc -3' miRNA: 3'- acUAGCCC---------------AGCUUGCGCAGCUCCUAC- -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 36446 | 0.81 | 0.165074 |
Target: 5'- ---cCGaGGUCGAcCGCGUCGAGGGUGa -3' miRNA: 3'- acuaGC-CCAGCUuGCGCAGCUCCUAC- -5' |
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23210 | 3' | -54.2 | NC_005259.1 | + | 31069 | 0.9 | 0.039568 |
Target: 5'- uUGAUCGGGUCGGcgagguucccgaGCGCGUCGGGGAUc -3' miRNA: 3'- -ACUAGCCCAGCU------------UGCGCAGCUCCUAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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