miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 3' -56.5 NC_005259.1 + 175 0.66 0.688383
Target:  5'- cGGCAcCACCgaCUCGGUcaucuauggcgcGUGGCgCGACgGCa -3'
miRNA:   3'- -UCGU-GUGG--GAGCUA------------CAUCG-GCUGgCG- -5'
23211 3' -56.5 NC_005259.1 + 783 0.69 0.518645
Target:  5'- aGGCGgcUGCCCUCGGUuggGUGGCCaaggGGCCGg -3'
miRNA:   3'- -UCGU--GUGGGAGCUA---CAUCGG----CUGGCg -5'
23211 3' -56.5 NC_005259.1 + 2139 0.68 0.581463
Target:  5'- cGCAgACCCgcaCGGUGcUGGCCaGCgGCg -3'
miRNA:   3'- uCGUgUGGGa--GCUAC-AUCGGcUGgCG- -5'
23211 3' -56.5 NC_005259.1 + 3488 0.67 0.667098
Target:  5'- -cCACACCCUgccucacgCGAccaUGUGcGCCG-CCGCg -3'
miRNA:   3'- ucGUGUGGGA--------GCU---ACAU-CGGCuGGCG- -5'
23211 3' -56.5 NC_005259.1 + 3977 0.66 0.740514
Target:  5'- gAGCGguCCCgCGAgcacgcgaUGGCgGGCCGCg -3'
miRNA:   3'- -UCGUguGGGaGCUac------AUCGgCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 4119 0.7 0.498282
Target:  5'- --gGCGgCCUCGAcGUGGCCaaGACCGUc -3'
miRNA:   3'- ucgUGUgGGAGCUaCAUCGG--CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 4293 0.69 0.549777
Target:  5'- gAGCACggaccggcgGCCCUgCGAUG-AGCgCGACCa- -3'
miRNA:   3'- -UCGUG---------UGGGA-GCUACaUCG-GCUGGcg -5'
23211 3' -56.5 NC_005259.1 + 4427 0.69 0.53933
Target:  5'- cGCGCGCCCgaGGUcgAGCCGcCCGUg -3'
miRNA:   3'- uCGUGUGGGagCUAcaUCGGCuGGCG- -5'
23211 3' -56.5 NC_005259.1 + 4608 0.7 0.446185
Target:  5'- aGGCACGCUgUCGGgccgGUGGCgCGAguucuggauagugcCCGCg -3'
miRNA:   3'- -UCGUGUGGgAGCUa---CAUCG-GCU--------------GGCG- -5'
23211 3' -56.5 NC_005259.1 + 6336 0.67 0.645687
Target:  5'- gGGCACACCCacgaCGggGU-GCCguacGugCGCa -3'
miRNA:   3'- -UCGUGUGGGa---GCuaCAuCGG----CugGCG- -5'
23211 3' -56.5 NC_005259.1 + 6406 0.67 0.656403
Target:  5'- aGGCgguGCCCU-GAUGUGGCcCGACCu- -3'
miRNA:   3'- -UCGug-UGGGAgCUACAUCG-GCUGGcg -5'
23211 3' -56.5 NC_005259.1 + 6501 0.67 0.62423
Target:  5'- uGCugGCCCacaUCGAccgacGCCGugCGCg -3'
miRNA:   3'- uCGugUGGG---AGCUacau-CGGCugGCG- -5'
23211 3' -56.5 NC_005259.1 + 6969 0.69 0.52895
Target:  5'- -cCACACCCUCGAUGaccuaacGCCGAgauugaCGCc -3'
miRNA:   3'- ucGUGUGGGAGCUACau-----CGGCUg-----GCG- -5'
23211 3' -56.5 NC_005259.1 + 7948 0.67 0.63496
Target:  5'- uGCGCGCCCaCGGcugcuugGUGGCCcacgcccACCGCa -3'
miRNA:   3'- uCGUGUGGGaGCUa------CAUCGGc------UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 8539 0.7 0.449054
Target:  5'- cGGCGaugaGCUCggCGGUGUAGCCcaugcGCCGCa -3'
miRNA:   3'- -UCGUg---UGGGa-GCUACAUCGGc----UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 11515 0.69 0.52895
Target:  5'- aGGC-CAUCCUCGGcggcagcgaucuUG-AGCCGuuGCCGCa -3'
miRNA:   3'- -UCGuGUGGGAGCU------------ACaUCGGC--UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 12167 0.73 0.311891
Target:  5'- cGGCAcCGCCCUCGGUcgaaccuGCCGgACCGUg -3'
miRNA:   3'- -UCGU-GUGGGAGCUAcau----CGGC-UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 13536 0.67 0.62423
Target:  5'- cGGC-CACCaagcaguucgCGAUGUGGCCcGCCGa -3'
miRNA:   3'- -UCGuGUGGga--------GCUACAUCGGcUGGCg -5'
23211 3' -56.5 NC_005259.1 + 14316 0.75 0.237542
Target:  5'- uGGC-CGCCCUCGAcGccGCCGcCCGCg -3'
miRNA:   3'- -UCGuGUGGGAGCUaCauCGGCuGGCG- -5'
23211 3' -56.5 NC_005259.1 + 14719 0.67 0.677761
Target:  5'- cAGCACGCCgcgCUCgucgccgaGAUGUAcgcGCUGGCCGg -3'
miRNA:   3'- -UCGUGUGG---GAG--------CUACAU---CGGCUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.