miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 3' -56.5 NC_005259.1 + 48626 0.66 0.740514
Target:  5'- cGCACugCCUCGccG-AGaCgGGCUGCc -3'
miRNA:   3'- uCGUGugGGAGCuaCaUC-GgCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 42930 0.72 0.351116
Target:  5'- gAGCAUgagGCCCUCGccGUGGgCGagGCCGCc -3'
miRNA:   3'- -UCGUG---UGGGAGCuaCAUCgGC--UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 41402 0.72 0.366913
Target:  5'- uGGCGCGCCgCUCGggGU-GCCcacgaugugcacgGGCCGCc -3'
miRNA:   3'- -UCGUGUGG-GAGCuaCAuCGG-------------CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 41489 0.72 0.376279
Target:  5'- gAGCACGaCCUCGGcgGUGGCgggcaGACCGUg -3'
miRNA:   3'- -UCGUGUgGGAGCUa-CAUCGg----CUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 41062 0.72 0.384933
Target:  5'- gAGUGCGCCCacggcUCGAUGUcacgcAGCCGGUCGUa -3'
miRNA:   3'- -UCGUGUGGG-----AGCUACA-----UCGGCUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 42197 0.72 0.384933
Target:  5'- uGCGCGCCgucgCGAUGgauGCCcGCCGCg -3'
miRNA:   3'- uCGUGUGGga--GCUACau-CGGcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 66012 0.71 0.402631
Target:  5'- uGCGCACCCUCGG---GGCCGcacguguuGCgCGCg -3'
miRNA:   3'- uCGUGUGGGAGCUacaUCGGC--------UG-GCG- -5'
23211 3' -56.5 NC_005259.1 + 40805 0.71 0.411672
Target:  5'- uAGCGguCACCCUCGG---GGUCGACgCGCa -3'
miRNA:   3'- -UCGU--GUGGGAGCUacaUCGGCUG-GCG- -5'
23211 3' -56.5 NC_005259.1 + 16491 0.71 0.411672
Target:  5'- gGGCGCACCCgcgCGca-UGGCCGAgaGCg -3'
miRNA:   3'- -UCGUGUGGGa--GCuacAUCGGCUggCG- -5'
23211 3' -56.5 NC_005259.1 + 23950 0.73 0.342998
Target:  5'- uGCGCACCC-CGAgacgGGCCGAuugaccucguacCCGCg -3'
miRNA:   3'- uCGUGUGGGaGCUaca-UCGGCU------------GGCG- -5'
23211 3' -56.5 NC_005259.1 + 21493 0.73 0.342998
Target:  5'- uGCAcCGCCCUCGGUGgAGCa-ACUGCa -3'
miRNA:   3'- uCGU-GUGGGAGCUACaUCGgcUGGCG- -5'
23211 3' -56.5 NC_005259.1 + 12167 0.73 0.311891
Target:  5'- cGGCAcCGCCCUCGGUcgaaccuGCCGgACCGUg -3'
miRNA:   3'- -UCGU-GUGGGAGCUAcau----CGGC-UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 57869 0.89 0.025953
Target:  5'- uGCgACACCCUCGAUGUGGCgGugCGCg -3'
miRNA:   3'- uCG-UGUGGGAGCUACAUCGgCugGCG- -5'
23211 3' -56.5 NC_005259.1 + 55811 0.82 0.090536
Target:  5'- cGGCuCACCCUCGggGUAgGCCG-CCGCg -3'
miRNA:   3'- -UCGuGUGGGAGCuaCAU-CGGCuGGCG- -5'
23211 3' -56.5 NC_005259.1 + 26343 0.78 0.156391
Target:  5'- uAGCACGCCCUCG----GGCCGAgCUGCg -3'
miRNA:   3'- -UCGUGUGGGAGCuacaUCGGCU-GGCG- -5'
23211 3' -56.5 NC_005259.1 + 45766 0.78 0.164966
Target:  5'- gAGCACGCCCUCGccGgguGCCaGcACCGCg -3'
miRNA:   3'- -UCGUGUGGGAGCuaCau-CGG-C-UGGCG- -5'
23211 3' -56.5 NC_005259.1 + 34430 0.77 0.193268
Target:  5'- gAGaCGC-CCCUCGAUGagcuGCCGACCGg -3'
miRNA:   3'- -UC-GUGuGGGAGCUACau--CGGCUGGCg -5'
23211 3' -56.5 NC_005259.1 + 40560 0.76 0.19838
Target:  5'- cGCGCGCCCgcgCGGUGUugcuGUCGGCgGCu -3'
miRNA:   3'- uCGUGUGGGa--GCUACAu---CGGCUGgCG- -5'
23211 3' -56.5 NC_005259.1 + 14316 0.75 0.237542
Target:  5'- uGGC-CGCCCUCGAcGccGCCGcCCGCg -3'
miRNA:   3'- -UCGuGUGGGAGCUaCauCGGCuGGCG- -5'
23211 3' -56.5 NC_005259.1 + 42640 0.74 0.282973
Target:  5'- aGGCACcucgGCCC-CGAUGUGGgCGGCCacGCg -3'
miRNA:   3'- -UCGUG----UGGGaGCUACAUCgGCUGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.