miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 5' -63.7 NC_005259.1 + 56904 1.13 0.000112
Target:  5'- aGCGUGGCCGCCGCAGCAGGCGUGCCCg -3'
miRNA:   3'- -CGCACCGGCGGCGUCGUCCGCACGGG- -5'
23211 5' -63.7 NC_005259.1 + 31246 0.77 0.062163
Target:  5'- gGCGcGGCggugccgccccacaCGCCGCAGUAGGCGguggcgagaucuUGCCCg -3'
miRNA:   3'- -CGCaCCG--------------GCGGCGUCGUCCGC------------ACGGG- -5'
23211 5' -63.7 NC_005259.1 + 53521 0.75 0.093657
Target:  5'- uCGUGGCCaGCgGCA-CGGGCucgGUGCCCg -3'
miRNA:   3'- cGCACCGG-CGgCGUcGUCCG---CACGGG- -5'
23211 5' -63.7 NC_005259.1 + 34845 0.74 0.098755
Target:  5'- ---aGGCCGCC-CAGUucucAGGCGUGUCCu -3'
miRNA:   3'- cgcaCCGGCGGcGUCG----UCCGCACGGG- -5'
23211 5' -63.7 NC_005259.1 + 29933 0.74 0.103841
Target:  5'- cGCGUGGCCGCCacgcggcccggucGCggcugguggGGCGGGCGgugaccGUCCa -3'
miRNA:   3'- -CGCACCGGCGG-------------CG---------UCGUCCGCa-----CGGG- -5'
23211 5' -63.7 NC_005259.1 + 46294 0.74 0.109748
Target:  5'- aGCGgGGCCGCCGUGGCu-GCGUuguucgcgGCCCc -3'
miRNA:   3'- -CGCaCCGGCGGCGUCGucCGCA--------CGGG- -5'
23211 5' -63.7 NC_005259.1 + 26414 0.73 0.114759
Target:  5'- cGCGgcgGuGCCGCCGUagaacgcaccgccgAGCGGGCGgGCCg -3'
miRNA:   3'- -CGCa--C-CGGCGGCG--------------UCGUCCGCaCGGg -5'
23211 5' -63.7 NC_005259.1 + 43962 0.73 0.115665
Target:  5'- gGCGgGGCCGCCGCcuGaccgaGGGCgGUGCCg -3'
miRNA:   3'- -CGCaCCGGCGGCGu-Cg----UCCG-CACGGg -5'
23211 5' -63.7 NC_005259.1 + 67983 0.73 0.121879
Target:  5'- gGCGUGGCCaCCGCcGCGaGCGUcgacuuGCCCu -3'
miRNA:   3'- -CGCACCGGcGGCGuCGUcCGCA------CGGG- -5'
23211 5' -63.7 NC_005259.1 + 37275 0.72 0.141692
Target:  5'- ---aGGCCGCC-CGGCAGGacuugcauggcgGUGCCCg -3'
miRNA:   3'- cgcaCCGGCGGcGUCGUCCg-----------CACGGG- -5'
23211 5' -63.7 NC_005259.1 + 45526 0.72 0.142058
Target:  5'- gGUGuUGGCCGCCGUggcugcgAGCGGGU-UGCUCg -3'
miRNA:   3'- -CGC-ACCGGCGGCG-------UCGUCCGcACGGG- -5'
23211 5' -63.7 NC_005259.1 + 35661 0.71 0.178758
Target:  5'- aGgGUGGCCaGCgCGguGguGGUgcacagcgacgccGUGCCCg -3'
miRNA:   3'- -CgCACCGG-CG-GCguCguCCG-------------CACGGG- -5'
23211 5' -63.7 NC_005259.1 + 60144 0.7 0.183782
Target:  5'- cGCGgccuUGGCCGCCGCcucAGCggccucacGGGCGgcgaacGCCUg -3'
miRNA:   3'- -CGC----ACCGGCGGCG---UCG--------UCCGCa-----CGGG- -5'
23211 5' -63.7 NC_005259.1 + 27092 0.7 0.203112
Target:  5'- uGCGgcGGCUGCCauGCGGUGGGCuGUGUCa -3'
miRNA:   3'- -CGCa-CCGGCGG--CGUCGUCCG-CACGGg -5'
23211 5' -63.7 NC_005259.1 + 8949 0.7 0.208213
Target:  5'- gGUG-GGCgCGCCGUGGaCGGGCaccGUGCCg -3'
miRNA:   3'- -CGCaCCG-GCGGCGUC-GUCCG---CACGGg -5'
23211 5' -63.7 NC_005259.1 + 37210 0.7 0.213424
Target:  5'- cGCcaccGCCGCCGCcGCcgGGGCGcugGCCCg -3'
miRNA:   3'- -CGcac-CGGCGGCGuCG--UCCGCa--CGGG- -5'
23211 5' -63.7 NC_005259.1 + 41401 0.7 0.213424
Target:  5'- --aUGGCgCGCCGCu-CGGG-GUGCCCa -3'
miRNA:   3'- cgcACCG-GCGGCGucGUCCgCACGGG- -5'
23211 5' -63.7 NC_005259.1 + 50965 0.69 0.218747
Target:  5'- cGCGUGGCUGUcccaCGCGGCGaGCgGUGUCg -3'
miRNA:   3'- -CGCACCGGCG----GCGUCGUcCG-CACGGg -5'
23211 5' -63.7 NC_005259.1 + 51651 0.69 0.224182
Target:  5'- gGCGaacgGGuuGCCGC-GCGGGCGcGUCg -3'
miRNA:   3'- -CGCa---CCggCGGCGuCGUCCGCaCGGg -5'
23211 5' -63.7 NC_005259.1 + 58566 0.69 0.229732
Target:  5'- gGCGguugGGCCGgaUCGCGGCGcGGC-UGCCg -3'
miRNA:   3'- -CGCa---CCGGC--GGCGUCGU-CCGcACGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.