miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 5' -63.7 NC_005259.1 + 202 0.67 0.320025
Target:  5'- cGCGUGGCgCGacggcaaGCAGUucGGGCaGUGCUa -3'
miRNA:   3'- -CGCACCG-GCgg-----CGUCG--UCCG-CACGGg -5'
23211 5' -63.7 NC_005259.1 + 6117 0.68 0.285015
Target:  5'- cCGaGGCCGCCGCuacGCGGGCacUGCa- -3'
miRNA:   3'- cGCaCCGGCGGCGu--CGUCCGc-ACGgg -5'
23211 5' -63.7 NC_005259.1 + 8949 0.7 0.208213
Target:  5'- gGUG-GGCgCGCCGUGGaCGGGCaccGUGCCg -3'
miRNA:   3'- -CGCaCCG-GCGGCGUC-GUCCG---CACGGg -5'
23211 5' -63.7 NC_005259.1 + 11074 0.66 0.374282
Target:  5'- aGCGUGGaaGCCGUAcggcucgaccucGCAGGUGUuCUUg -3'
miRNA:   3'- -CGCACCggCGGCGU------------CGUCCGCAcGGG- -5'
23211 5' -63.7 NC_005259.1 + 13424 0.69 0.24118
Target:  5'- gGgGUcGCCGCCGgGGCcgcgcuAGGCGUGaCCg -3'
miRNA:   3'- -CgCAcCGGCGGCgUCG------UCCGCACgGG- -5'
23211 5' -63.7 NC_005259.1 + 15393 0.67 0.320025
Target:  5'- cCGUGGCCG-CGCAcucccaaggguGCGcuGCGUGCCa -3'
miRNA:   3'- cGCACCGGCgGCGU-----------CGUc-CGCACGGg -5'
23211 5' -63.7 NC_005259.1 + 17757 0.67 0.289729
Target:  5'- cGUGaGGCCGCCGCGcGCcGGGCcgagcgcaccgagcGUGCgCa -3'
miRNA:   3'- -CGCaCCGGCGGCGU-CG-UCCG--------------CACGgG- -5'
23211 5' -63.7 NC_005259.1 + 18342 0.66 0.366161
Target:  5'- uCGUGGUcgaCGCCGaCGGCGacauguGGCacaUGCCCg -3'
miRNA:   3'- cGCACCG---GCGGC-GUCGU------CCGc--ACGGG- -5'
23211 5' -63.7 NC_005259.1 + 19949 0.66 0.373465
Target:  5'- cGUGUGcGuCCGCaacgGCGGCucGGCGgugugggUGCCCg -3'
miRNA:   3'- -CGCAC-C-GGCGg---CGUCGu-CCGC-------ACGGG- -5'
23211 5' -63.7 NC_005259.1 + 20128 0.67 0.305646
Target:  5'- cGCacUGGCUGCCGUcgcgaugacGGCAGcCGgUGCCCu -3'
miRNA:   3'- -CGc-ACCGGCGGCG---------UCGUCcGC-ACGGG- -5'
23211 5' -63.7 NC_005259.1 + 20531 0.66 0.382525
Target:  5'- cGgGUGcGCUGcCCGCAGCGuGGUGgaucaGCaCCg -3'
miRNA:   3'- -CgCAC-CGGC-GGCGUCGU-CCGCa----CG-GG- -5'
23211 5' -63.7 NC_005259.1 + 23615 0.67 0.33415
Target:  5'- cGCGUGGCgGCagccaGaCGGCucGGUGUgguuucgGCCCg -3'
miRNA:   3'- -CGCACCGgCGg----C-GUCGu-CCGCA-------CGGG- -5'
23211 5' -63.7 NC_005259.1 + 26414 0.73 0.114759
Target:  5'- cGCGgcgGuGCCGCCGUagaacgcaccgccgAGCGGGCGgGCCg -3'
miRNA:   3'- -CGCa--C-CGGCGGCG--------------UCGUCCGCaCGGg -5'
23211 5' -63.7 NC_005259.1 + 27092 0.7 0.203112
Target:  5'- uGCGgcGGCUGCCauGCGGUGGGCuGUGUCa -3'
miRNA:   3'- -CGCa-CCGGCGG--CGUCGUCCG-CACGGg -5'
23211 5' -63.7 NC_005259.1 + 27398 0.68 0.265499
Target:  5'- gGUGUcGGCaGCgGCGGCAGcucgGUGCCCg -3'
miRNA:   3'- -CGCA-CCGgCGgCGUCGUCcg--CACGGG- -5'
23211 5' -63.7 NC_005259.1 + 28300 0.66 0.358161
Target:  5'- aCG-GuGCCGCCcugcGCAGCGuagaucGGUGUGCCg -3'
miRNA:   3'- cGCaC-CGGCGG----CGUCGU------CCGCACGGg -5'
23211 5' -63.7 NC_005259.1 + 29933 0.74 0.103841
Target:  5'- cGCGUGGCCGCCacgcggcccggucGCggcugguggGGCGGGCGgugaccGUCCa -3'
miRNA:   3'- -CGCACCGGCGG-------------CG---------UCGUCCGCa-----CGGG- -5'
23211 5' -63.7 NC_005259.1 + 31246 0.77 0.062163
Target:  5'- gGCGcGGCggugccgccccacaCGCCGCAGUAGGCGguggcgagaucuUGCCCg -3'
miRNA:   3'- -CGCaCCG--------------GCGGCGUCGUCCGC------------ACGGG- -5'
23211 5' -63.7 NC_005259.1 + 32353 0.69 0.234826
Target:  5'- cGCGaGGuugaugaCCGCCGUguagGGCGGGCacUGCCCg -3'
miRNA:   3'- -CGCaCC-------GGCGGCG----UCGUCCGc-ACGGG- -5'
23211 5' -63.7 NC_005259.1 + 34845 0.74 0.098755
Target:  5'- ---aGGCCGCC-CAGUucucAGGCGUGUCCu -3'
miRNA:   3'- cgcaCCGGCGGcGUCG----UCCGCACGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.