miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23211 5' -63.7 NC_005259.1 + 17757 0.67 0.289729
Target:  5'- cGUGaGGCCGCCGCGcGCcGGGCcgagcgcaccgagcGUGCgCa -3'
miRNA:   3'- -CGCaCCGGCGGCGU-CG-UCCG--------------CACGgG- -5'
23211 5' -63.7 NC_005259.1 + 6117 0.68 0.285015
Target:  5'- cCGaGGCCGCCGCuacGCGGGCacUGCa- -3'
miRNA:   3'- cGCaCCGGCGGCGu--CGUCCGc-ACGgg -5'
23211 5' -63.7 NC_005259.1 + 57446 0.68 0.285015
Target:  5'- gGCGagguUGGUgcgaCGCUGCGGCAGGcCGgugGCaCCg -3'
miRNA:   3'- -CGC----ACCG----GCGGCGUCGUCC-GCa--CG-GG- -5'
23211 5' -63.7 NC_005259.1 + 45335 0.68 0.278387
Target:  5'- uGCGUGGCCugcgccgccuggGCCGCcGCguagucgacgGGGUuuUGCCCg -3'
miRNA:   3'- -CGCACCGG------------CGGCGuCG----------UCCGc-ACGGG- -5'
23211 5' -63.7 NC_005259.1 + 68178 0.68 0.271882
Target:  5'- cGCGcuuUGGCaGCuCGCAGCGaagccagcauGGCGUGCUUc -3'
miRNA:   3'- -CGC---ACCGgCG-GCGUCGU----------CCGCACGGG- -5'
23211 5' -63.7 NC_005259.1 + 27398 0.68 0.265499
Target:  5'- gGUGUcGGCaGCgGCGGCAGcucgGUGCCCg -3'
miRNA:   3'- -CGCA-CCGgCGgCGUCGUCcg--CACGGG- -5'
23211 5' -63.7 NC_005259.1 + 38743 0.68 0.265499
Target:  5'- gGCgGUGGcCCGCCGCAGgCcGGUGaGCUg -3'
miRNA:   3'- -CG-CACC-GGCGGCGUC-GuCCGCaCGGg -5'
23211 5' -63.7 NC_005259.1 + 35511 0.68 0.265499
Target:  5'- cCGUuGCCGCCGCcGcCGGGCacaccGCCCg -3'
miRNA:   3'- cGCAcCGGCGGCGuC-GUCCGca---CGGG- -5'
23211 5' -63.7 NC_005259.1 + 13424 0.69 0.24118
Target:  5'- gGgGUcGCCGCCGgGGCcgcgcuAGGCGUGaCCg -3'
miRNA:   3'- -CgCAcCGGCGGCgUCG------UCCGCACgGG- -5'
23211 5' -63.7 NC_005259.1 + 52021 0.69 0.235398
Target:  5'- aGCGUcaGGCCGCCGCAcuGCGcGCuGUcGCCg -3'
miRNA:   3'- -CGCA--CCGGCGGCGU--CGUcCG-CA-CGGg -5'
23211 5' -63.7 NC_005259.1 + 32353 0.69 0.234826
Target:  5'- cGCGaGGuugaugaCCGCCGUguagGGCGGGCacUGCCCg -3'
miRNA:   3'- -CGCaCC-------GGCGGCG----UCGUCCGc-ACGGG- -5'
23211 5' -63.7 NC_005259.1 + 58566 0.69 0.229732
Target:  5'- gGCGguugGGCCGgaUCGCGGCGcGGC-UGCCg -3'
miRNA:   3'- -CGCa---CCGGC--GGCGUCGU-CCGcACGGg -5'
23211 5' -63.7 NC_005259.1 + 41685 0.69 0.229732
Target:  5'- uGCGUGGCCaCCGCGcacaCAGGCaUGCagCCg -3'
miRNA:   3'- -CGCACCGGcGGCGUc---GUCCGcACG--GG- -5'
23211 5' -63.7 NC_005259.1 + 51651 0.69 0.224182
Target:  5'- gGCGaacgGGuuGCCGC-GCGGGCGcGUCg -3'
miRNA:   3'- -CGCa---CCggCGGCGuCGUCCGCaCGGg -5'
23211 5' -63.7 NC_005259.1 + 50965 0.69 0.218747
Target:  5'- cGCGUGGCUGUcccaCGCGGCGaGCgGUGUCg -3'
miRNA:   3'- -CGCACCGGCG----GCGUCGUcCG-CACGGg -5'
23211 5' -63.7 NC_005259.1 + 37210 0.7 0.213424
Target:  5'- cGCcaccGCCGCCGCcGCcgGGGCGcugGCCCg -3'
miRNA:   3'- -CGcac-CGGCGGCGuCG--UCCGCa--CGGG- -5'
23211 5' -63.7 NC_005259.1 + 41401 0.7 0.213424
Target:  5'- --aUGGCgCGCCGCu-CGGG-GUGCCCa -3'
miRNA:   3'- cgcACCG-GCGGCGucGUCCgCACGGG- -5'
23211 5' -63.7 NC_005259.1 + 8949 0.7 0.208213
Target:  5'- gGUG-GGCgCGCCGUGGaCGGGCaccGUGCCg -3'
miRNA:   3'- -CGCaCCG-GCGGCGUC-GUCCG---CACGGg -5'
23211 5' -63.7 NC_005259.1 + 27092 0.7 0.203112
Target:  5'- uGCGgcGGCUGCCauGCGGUGGGCuGUGUCa -3'
miRNA:   3'- -CGCa-CCGGCGG--CGUCGUCCG-CACGGg -5'
23211 5' -63.7 NC_005259.1 + 60144 0.7 0.183782
Target:  5'- cGCGgccuUGGCCGCCGCcucAGCggccucacGGGCGgcgaacGCCUg -3'
miRNA:   3'- -CGC----ACCGGCGGCG---UCG--------UCCGCa-----CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.