Results 21 - 40 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23212 | 3' | -55.2 | NC_005259.1 | + | 6565 | 0.68 | 0.678298 |
Target: 5'- uGCG-CGGCGUGUCagGCCGCCucgGAc -3' miRNA: 3'- gCGCaGCUGCAUAGg-CGGUGGcuaCU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 35868 | 0.69 | 0.667681 |
Target: 5'- cCGCGUCcACcgcagCCGCCGCCGAg-- -3' miRNA: 3'- -GCGCAGcUGcaua-GGCGGUGGCUacu -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 41967 | 0.69 | 0.635682 |
Target: 5'- uCGCGUUGACuUGUCCGgugaucucaggaCCGgCGGUGAg -3' miRNA: 3'- -GCGCAGCUGcAUAGGC------------GGUgGCUACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 9522 | 0.69 | 0.635682 |
Target: 5'- gCGCGUCGACcg--CCGCCgggucACCGGaGAg -3' miRNA: 3'- -GCGCAGCUGcauaGGCGG-----UGGCUaCU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 31094 | 0.69 | 0.629271 |
Target: 5'- gCGCGUCGGgGaucaGUCCgaugagucgcccgauGUCGCCGAUGAu -3' miRNA: 3'- -GCGCAGCUgCa---UAGG---------------CGGUGGCUACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 12274 | 0.69 | 0.624997 |
Target: 5'- uCGCGUCGugGaucUCaCGCCGCCGc--- -3' miRNA: 3'- -GCGCAGCugCau-AG-GCGGUGGCuacu -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 42770 | 0.69 | 0.614318 |
Target: 5'- uGC-UCGGCGgucucggggCCGCCACCGAUc- -3' miRNA: 3'- gCGcAGCUGCaua------GGCGGUGGCUAcu -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 9336 | 0.7 | 0.593013 |
Target: 5'- aCGUGUCGAgGU---CGgCACCGAUGAc -3' miRNA: 3'- -GCGCAGCUgCAuagGCgGUGGCUACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 38780 | 0.7 | 0.571831 |
Target: 5'- -aUGUCGGCGaaaccgaaaCCGCUGCCGAUGAg -3' miRNA: 3'- gcGCAGCUGCaua------GGCGGUGGCUACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 45792 | 0.71 | 0.550836 |
Target: 5'- cCGCGUUGACgGUGUCCuGCUugggugcguaGCCGggGAu -3' miRNA: 3'- -GCGCAGCUG-CAUAGG-CGG----------UGGCuaCU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 42810 | 0.71 | 0.530082 |
Target: 5'- gCGCGUgcacUGugGUAUugcugCCGCCGCCGAa-- -3' miRNA: 3'- -GCGCA----GCugCAUA-----GGCGGUGGCUacu -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 67155 | 0.71 | 0.530082 |
Target: 5'- cCGCuuGUCGAUGguggcggCCauGCCGCCGAUGAu -3' miRNA: 3'- -GCG--CAGCUGCaua----GG--CGGUGGCUACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 35622 | 0.71 | 0.509621 |
Target: 5'- uGCGUCGA-GUAguucgggCCGCCGCCGcUGc -3' miRNA: 3'- gCGCAGCUgCAUa------GGCGGUGGCuACu -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 39296 | 0.71 | 0.499514 |
Target: 5'- cCGCGUcaucgaagugcaCGACGcccgcUGUCgCGCCGCUGGUGAc -3' miRNA: 3'- -GCGCA------------GCUGC-----AUAG-GCGGUGGCUACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 43949 | 0.72 | 0.476619 |
Target: 5'- aGCGUCGGCGaUGggcggggccgCCGCCugaccgagggcgguGCCGAUGGa -3' miRNA: 3'- gCGCAGCUGC-AUa---------GGCGG--------------UGGCUACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 27506 | 0.72 | 0.460036 |
Target: 5'- gCGCcgagGUCGACGUGUCCGCacaCGCCGucGAg -3' miRNA: 3'- -GCG----CAGCUGCAUAGGCG---GUGGCuaCU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 66040 | 0.73 | 0.404107 |
Target: 5'- gCGCGagcUCGACGUAgaCGCCGCCG-UGGg -3' miRNA: 3'- -GCGC---AGCUGCAUagGCGGUGGCuACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 46957 | 0.74 | 0.352668 |
Target: 5'- cCGCGUUGAgcuUGUuggccaCGCCGCCGAUGAu -3' miRNA: 3'- -GCGCAGCU---GCAuag---GCGGUGGCUACU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 67592 | 0.74 | 0.344559 |
Target: 5'- aCGCGUCgggcgcgaGACGUGUUCgaGCCACCGAcGAa -3' miRNA: 3'- -GCGCAG--------CUGCAUAGG--CGGUGGCUaCU- -5' |
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23212 | 3' | -55.2 | NC_005259.1 | + | 43656 | 0.75 | 0.311229 |
Target: 5'- uGCGcCGACgGUGUcguugccgaucacaCCGCCGCCGGUGGc -3' miRNA: 3'- gCGCaGCUG-CAUA--------------GGCGGUGGCUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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