miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23212 3' -55.2 NC_005259.1 + 6565 0.68 0.678298
Target:  5'- uGCG-CGGCGUGUCagGCCGCCucgGAc -3'
miRNA:   3'- gCGCaGCUGCAUAGg-CGGUGGcuaCU- -5'
23212 3' -55.2 NC_005259.1 + 35868 0.69 0.667681
Target:  5'- cCGCGUCcACcgcagCCGCCGCCGAg-- -3'
miRNA:   3'- -GCGCAGcUGcaua-GGCGGUGGCUacu -5'
23212 3' -55.2 NC_005259.1 + 41967 0.69 0.635682
Target:  5'- uCGCGUUGACuUGUCCGgugaucucaggaCCGgCGGUGAg -3'
miRNA:   3'- -GCGCAGCUGcAUAGGC------------GGUgGCUACU- -5'
23212 3' -55.2 NC_005259.1 + 9522 0.69 0.635682
Target:  5'- gCGCGUCGACcg--CCGCCgggucACCGGaGAg -3'
miRNA:   3'- -GCGCAGCUGcauaGGCGG-----UGGCUaCU- -5'
23212 3' -55.2 NC_005259.1 + 31094 0.69 0.629271
Target:  5'- gCGCGUCGGgGaucaGUCCgaugagucgcccgauGUCGCCGAUGAu -3'
miRNA:   3'- -GCGCAGCUgCa---UAGG---------------CGGUGGCUACU- -5'
23212 3' -55.2 NC_005259.1 + 12274 0.69 0.624997
Target:  5'- uCGCGUCGugGaucUCaCGCCGCCGc--- -3'
miRNA:   3'- -GCGCAGCugCau-AG-GCGGUGGCuacu -5'
23212 3' -55.2 NC_005259.1 + 42770 0.69 0.614318
Target:  5'- uGC-UCGGCGgucucggggCCGCCACCGAUc- -3'
miRNA:   3'- gCGcAGCUGCaua------GGCGGUGGCUAcu -5'
23212 3' -55.2 NC_005259.1 + 9336 0.7 0.593013
Target:  5'- aCGUGUCGAgGU---CGgCACCGAUGAc -3'
miRNA:   3'- -GCGCAGCUgCAuagGCgGUGGCUACU- -5'
23212 3' -55.2 NC_005259.1 + 38780 0.7 0.571831
Target:  5'- -aUGUCGGCGaaaccgaaaCCGCUGCCGAUGAg -3'
miRNA:   3'- gcGCAGCUGCaua------GGCGGUGGCUACU- -5'
23212 3' -55.2 NC_005259.1 + 45792 0.71 0.550836
Target:  5'- cCGCGUUGACgGUGUCCuGCUugggugcguaGCCGggGAu -3'
miRNA:   3'- -GCGCAGCUG-CAUAGG-CGG----------UGGCuaCU- -5'
23212 3' -55.2 NC_005259.1 + 42810 0.71 0.530082
Target:  5'- gCGCGUgcacUGugGUAUugcugCCGCCGCCGAa-- -3'
miRNA:   3'- -GCGCA----GCugCAUA-----GGCGGUGGCUacu -5'
23212 3' -55.2 NC_005259.1 + 67155 0.71 0.530082
Target:  5'- cCGCuuGUCGAUGguggcggCCauGCCGCCGAUGAu -3'
miRNA:   3'- -GCG--CAGCUGCaua----GG--CGGUGGCUACU- -5'
23212 3' -55.2 NC_005259.1 + 35622 0.71 0.509621
Target:  5'- uGCGUCGA-GUAguucgggCCGCCGCCGcUGc -3'
miRNA:   3'- gCGCAGCUgCAUa------GGCGGUGGCuACu -5'
23212 3' -55.2 NC_005259.1 + 39296 0.71 0.499514
Target:  5'- cCGCGUcaucgaagugcaCGACGcccgcUGUCgCGCCGCUGGUGAc -3'
miRNA:   3'- -GCGCA------------GCUGC-----AUAG-GCGGUGGCUACU- -5'
23212 3' -55.2 NC_005259.1 + 43949 0.72 0.476619
Target:  5'- aGCGUCGGCGaUGggcggggccgCCGCCugaccgagggcgguGCCGAUGGa -3'
miRNA:   3'- gCGCAGCUGC-AUa---------GGCGG--------------UGGCUACU- -5'
23212 3' -55.2 NC_005259.1 + 27506 0.72 0.460036
Target:  5'- gCGCcgagGUCGACGUGUCCGCacaCGCCGucGAg -3'
miRNA:   3'- -GCG----CAGCUGCAUAGGCG---GUGGCuaCU- -5'
23212 3' -55.2 NC_005259.1 + 66040 0.73 0.404107
Target:  5'- gCGCGagcUCGACGUAgaCGCCGCCG-UGGg -3'
miRNA:   3'- -GCGC---AGCUGCAUagGCGGUGGCuACU- -5'
23212 3' -55.2 NC_005259.1 + 46957 0.74 0.352668
Target:  5'- cCGCGUUGAgcuUGUuggccaCGCCGCCGAUGAu -3'
miRNA:   3'- -GCGCAGCU---GCAuag---GCGGUGGCUACU- -5'
23212 3' -55.2 NC_005259.1 + 67592 0.74 0.344559
Target:  5'- aCGCGUCgggcgcgaGACGUGUUCgaGCCACCGAcGAa -3'
miRNA:   3'- -GCGCAG--------CUGCAUAGG--CGGUGGCUaCU- -5'
23212 3' -55.2 NC_005259.1 + 43656 0.75 0.311229
Target:  5'- uGCGcCGACgGUGUcguugccgaucacaCCGCCGCCGGUGGc -3'
miRNA:   3'- gCGCaGCUG-CAUA--------------GGCGGUGGCUACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.