miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23212 5' -58.3 NC_005259.1 + 1540 0.73 0.267832
Target:  5'- gGCaUCAUCGGGG-CCGCguucggggcggUGACGCUGUg -3'
miRNA:   3'- -CG-GGUAGCCCCuGGCGa----------ACUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 5255 0.66 0.642135
Target:  5'- gGCUCggCGGGGAcuacggucagugucCCGUcgUUGACAUCGa -3'
miRNA:   3'- -CGGGuaGCCCCU--------------GGCG--AACUGUGGCg -5'
23212 5' -58.3 NC_005259.1 + 6204 0.67 0.592752
Target:  5'- aGCgUgagCGGGGugagccGCCGCgccGACACCGUg -3'
miRNA:   3'- -CGgGua-GCCCC------UGGCGaa-CUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 6486 0.66 0.617937
Target:  5'- cGCUCAcgCGGGuACUGCUggcccacaucgaccGACGCCGUg -3'
miRNA:   3'- -CGGGUa-GCCCcUGGCGAa-------------CUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 7424 0.68 0.489788
Target:  5'- -gCCGUCGGcGGugcccgcGCCGCaUGGCAgCGCc -3'
miRNA:   3'- cgGGUAGCC-CC-------UGGCGaACUGUgGCG- -5'
23212 5' -58.3 NC_005259.1 + 8749 0.68 0.54096
Target:  5'- aGCCCGUCGaGGucgaGGCC-CUUGGcCAgCGCg -3'
miRNA:   3'- -CGGGUAGC-CC----CUGGcGAACU-GUgGCG- -5'
23212 5' -58.3 NC_005259.1 + 9686 0.71 0.372043
Target:  5'- uGCCgGUCGaGGucGCCGCUcacugGGCACCGUc -3'
miRNA:   3'- -CGGgUAGCcCC--UGGCGAa----CUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 11422 0.66 0.64529
Target:  5'- gGCCgGUgcaaCGGGGA-UGCUUGG-GCCGCu -3'
miRNA:   3'- -CGGgUA----GCCCCUgGCGAACUgUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 11861 0.68 0.500645
Target:  5'- aCCCGUCGGcgaacguGACCGCc--GCACCGUc -3'
miRNA:   3'- cGGGUAGCCc------CUGGCGaacUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 12173 0.66 0.628456
Target:  5'- cGCCC-UCGGucgaaccugccGGACCGUggucgUGuagagaugcaccggcGCACCGCc -3'
miRNA:   3'- -CGGGuAGCC-----------CCUGGCGa----AC---------------UGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 13335 0.68 0.510607
Target:  5'- aCCCA-CGGcgGGACCGCcc--CGCCGCa -3'
miRNA:   3'- cGGGUaGCC--CCUGGCGaacuGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 13411 0.66 0.624248
Target:  5'- gGCCUuccuggcCGGGGucGCCGCc-GGgGCCGCg -3'
miRNA:   3'- -CGGGua-----GCCCC--UGGCGaaCUgUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 14238 0.66 0.635822
Target:  5'- uGCgUAUCGGGccgggcaacgacGACCGUgucgucaccccgucGACACCGCc -3'
miRNA:   3'- -CGgGUAGCCC------------CUGGCGaa------------CUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 14290 0.68 0.500645
Target:  5'- uGCCCAaccaccgaugUCGGugcguauGGCCGCccucGACGCCGCc -3'
miRNA:   3'- -CGGGU----------AGCCc------CUGGCGaa--CUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 14335 0.68 0.54096
Target:  5'- cGCCCG-CGuGcGGGCCGCc-GACGCCa- -3'
miRNA:   3'- -CGGGUaGC-C-CCUGGCGaaCUGUGGcg -5'
23212 5' -58.3 NC_005259.1 + 14562 0.67 0.582304
Target:  5'- gGCCgAgCGGGGACCGgCgaacacCAUCGCg -3'
miRNA:   3'- -CGGgUaGCCCCUGGC-Gaacu--GUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 15368 0.67 0.561528
Target:  5'- cGCCgAUCuGGGcgagcuGCCGCaaccGugGCCGCg -3'
miRNA:   3'- -CGGgUAGcCCC------UGGCGaa--CugUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 15576 0.68 0.53077
Target:  5'- aCCC-UCGGGG-CCaGCgcGACggGCCGCa -3'
miRNA:   3'- cGGGuAGCCCCuGG-CGaaCUG--UGGCG- -5'
23212 5' -58.3 NC_005259.1 + 15976 0.67 0.582304
Target:  5'- cGCCCAguUCGGucgagugaucACCGCcgGugGCCGCa -3'
miRNA:   3'- -CGGGU--AGCCcc--------UGGCGaaCugUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 16568 0.74 0.242735
Target:  5'- cGCCCAcCGGGcaGAUCGCcgagGACAUCGCc -3'
miRNA:   3'- -CGGGUaGCCC--CUGGCGaa--CUGUGGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.