Results 1 - 20 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 1540 | 0.73 | 0.267832 |
Target: 5'- gGCaUCAUCGGGG-CCGCguucggggcggUGACGCUGUg -3' miRNA: 3'- -CG-GGUAGCCCCuGGCGa----------ACUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 5255 | 0.66 | 0.642135 |
Target: 5'- gGCUCggCGGGGAcuacggucagugucCCGUcgUUGACAUCGa -3' miRNA: 3'- -CGGGuaGCCCCU--------------GGCG--AACUGUGGCg -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 6204 | 0.67 | 0.592752 |
Target: 5'- aGCgUgagCGGGGugagccGCCGCgccGACACCGUg -3' miRNA: 3'- -CGgGua-GCCCC------UGGCGaa-CUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 6486 | 0.66 | 0.617937 |
Target: 5'- cGCUCAcgCGGGuACUGCUggcccacaucgaccGACGCCGUg -3' miRNA: 3'- -CGGGUa-GCCCcUGGCGAa-------------CUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 7424 | 0.68 | 0.489788 |
Target: 5'- -gCCGUCGGcGGugcccgcGCCGCaUGGCAgCGCc -3' miRNA: 3'- cgGGUAGCC-CC-------UGGCGaACUGUgGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 8749 | 0.68 | 0.54096 |
Target: 5'- aGCCCGUCGaGGucgaGGCC-CUUGGcCAgCGCg -3' miRNA: 3'- -CGGGUAGC-CC----CUGGcGAACU-GUgGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 9686 | 0.71 | 0.372043 |
Target: 5'- uGCCgGUCGaGGucGCCGCUcacugGGCACCGUc -3' miRNA: 3'- -CGGgUAGCcCC--UGGCGAa----CUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 11422 | 0.66 | 0.64529 |
Target: 5'- gGCCgGUgcaaCGGGGA-UGCUUGG-GCCGCu -3' miRNA: 3'- -CGGgUA----GCCCCUgGCGAACUgUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 11861 | 0.68 | 0.500645 |
Target: 5'- aCCCGUCGGcgaacguGACCGCc--GCACCGUc -3' miRNA: 3'- cGGGUAGCCc------CUGGCGaacUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 12173 | 0.66 | 0.628456 |
Target: 5'- cGCCC-UCGGucgaaccugccGGACCGUggucgUGuagagaugcaccggcGCACCGCc -3' miRNA: 3'- -CGGGuAGCC-----------CCUGGCGa----AC---------------UGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 13335 | 0.68 | 0.510607 |
Target: 5'- aCCCA-CGGcgGGACCGCcc--CGCCGCa -3' miRNA: 3'- cGGGUaGCC--CCUGGCGaacuGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 13411 | 0.66 | 0.624248 |
Target: 5'- gGCCUuccuggcCGGGGucGCCGCc-GGgGCCGCg -3' miRNA: 3'- -CGGGua-----GCCCC--UGGCGaaCUgUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 14238 | 0.66 | 0.635822 |
Target: 5'- uGCgUAUCGGGccgggcaacgacGACCGUgucgucaccccgucGACACCGCc -3' miRNA: 3'- -CGgGUAGCCC------------CUGGCGaa------------CUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 14290 | 0.68 | 0.500645 |
Target: 5'- uGCCCAaccaccgaugUCGGugcguauGGCCGCccucGACGCCGCc -3' miRNA: 3'- -CGGGU----------AGCCc------CUGGCGaa--CUGUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 14335 | 0.68 | 0.54096 |
Target: 5'- cGCCCG-CGuGcGGGCCGCc-GACGCCa- -3' miRNA: 3'- -CGGGUaGC-C-CCUGGCGaaCUGUGGcg -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 14562 | 0.67 | 0.582304 |
Target: 5'- gGCCgAgCGGGGACCGgCgaacacCAUCGCg -3' miRNA: 3'- -CGGgUaGCCCCUGGC-Gaacu--GUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 15368 | 0.67 | 0.561528 |
Target: 5'- cGCCgAUCuGGGcgagcuGCCGCaaccGugGCCGCg -3' miRNA: 3'- -CGGgUAGcCCC------UGGCGaa--CugUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 15576 | 0.68 | 0.53077 |
Target: 5'- aCCC-UCGGGG-CCaGCgcGACggGCCGCa -3' miRNA: 3'- cGGGuAGCCCCuGG-CGaaCUG--UGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 15976 | 0.67 | 0.582304 |
Target: 5'- cGCCCAguUCGGucgagugaucACCGCcgGugGCCGCa -3' miRNA: 3'- -CGGGU--AGCCcc--------UGGCGaaCugUGGCG- -5' |
|||||||
23212 | 5' | -58.3 | NC_005259.1 | + | 16568 | 0.74 | 0.242735 |
Target: 5'- cGCCCAcCGGGcaGAUCGCcgagGACAUCGCc -3' miRNA: 3'- -CGGGUaGCCC--CUGGCGaa--CUGUGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home