miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23212 5' -58.3 NC_005259.1 + 35698 0.66 0.666288
Target:  5'- uGCCCggCGaGGGGUCGC-UGACGagguauCCGCc -3'
miRNA:   3'- -CGGGuaGC-CCCUGGCGaACUGU------GGCG- -5'
23212 5' -58.3 NC_005259.1 + 40697 0.7 0.40648
Target:  5'- gGCCCGaugaUCGGGGugcCCGCcaccacgGucCACCGCa -3'
miRNA:   3'- -CGGGU----AGCCCCu--GGCGaa-----Cu-GUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 29469 0.7 0.415397
Target:  5'- cGCCCGgcUCGGcauGGACCGCcgUGACuAUCaGCa -3'
miRNA:   3'- -CGGGU--AGCC---CCUGGCGa-ACUG-UGG-CG- -5'
23212 5' -58.3 NC_005259.1 + 25166 0.7 0.424433
Target:  5'- aGCCCGUUGGGuccGAcCCGU---ACGCCGCc -3'
miRNA:   3'- -CGGGUAGCCC---CU-GGCGaacUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 52050 0.69 0.471299
Target:  5'- -gCCGUCGaGGAUCGC--GACGCCGUc -3'
miRNA:   3'- cgGGUAGCcCCUGGCGaaCUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 66263 0.69 0.471299
Target:  5'- gGCCCGcgcCGGGcGGCgGCUc-ACGCCGCc -3'
miRNA:   3'- -CGGGUa--GCCC-CUGgCGAacUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 22182 0.69 0.480987
Target:  5'- cGCCCAUCGuGGuugcGACCuuGCagacgUUGGcCACCGCg -3'
miRNA:   3'- -CGGGUAGC-CC----CUGG--CG-----AACU-GUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 46347 0.69 0.480987
Target:  5'- cGCUUGUaGGuucuGGGCCGCgaUGGCACCGCc -3'
miRNA:   3'- -CGGGUAgCC----CCUGGCGa-ACUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 50653 0.69 0.480987
Target:  5'- cGCCC-UCGGGG-CCauagGGCACCaGCg -3'
miRNA:   3'- -CGGGuAGCCCCuGGcgaaCUGUGG-CG- -5'
23212 5' -58.3 NC_005259.1 + 24550 0.71 0.380464
Target:  5'- aGUCCAgaucggCGGGGugUaCUcgugGGCACCGCa -3'
miRNA:   3'- -CGGGUa-----GCCCCugGcGAa---CUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 9686 0.71 0.372043
Target:  5'- uGCCgGUCGaGGucGCCGCUcacugGGCACCGUc -3'
miRNA:   3'- -CGGgUAGCcCC--UGGCGAa----CUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 31551 0.71 0.355585
Target:  5'- cGCCUuguaGGGuGCCGCU--GCACCGCg -3'
miRNA:   3'- -CGGGuag-CCCcUGGCGAacUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 56094 0.78 0.137731
Target:  5'- uGCUCGUCGGGGccACCGCgUGGcCACCGa -3'
miRNA:   3'- -CGGGUAGCCCC--UGGCGaACU-GUGGCg -5'
23212 5' -58.3 NC_005259.1 + 46528 0.77 0.161326
Target:  5'- aGCCgGUCGGGGAUCGCcgaGAUcuggucgccgACCGCg -3'
miRNA:   3'- -CGGgUAGCCCCUGGCGaa-CUG----------UGGCG- -5'
23212 5' -58.3 NC_005259.1 + 19871 0.76 0.174443
Target:  5'- cGCCCG-CcGGGAUCGCc-GACGCCGCg -3'
miRNA:   3'- -CGGGUaGcCCCUGGCGaaCUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 34726 0.74 0.242735
Target:  5'- cGCCuCGUCGGGGAaaCCGUUgGugAUCGUg -3'
miRNA:   3'- -CGG-GUAGCCCCU--GGCGAaCugUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 16568 0.74 0.242735
Target:  5'- cGCCCAcCGGGcaGAUCGCcgagGACAUCGCc -3'
miRNA:   3'- -CGGGUaGCCC--CUGGCGaa--CUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 1540 0.73 0.267832
Target:  5'- gGCaUCAUCGGGG-CCGCguucggggcggUGACGCUGUg -3'
miRNA:   3'- -CG-GGUAGCCCCuGGCGa----------ACUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 18672 0.72 0.331873
Target:  5'- cGCCCGaguacgucaUCGaGGGuCUGCUUGAgCACgGCg -3'
miRNA:   3'- -CGGGU---------AGC-CCCuGGCGAACU-GUGgCG- -5'
23212 5' -58.3 NC_005259.1 + 63708 0.71 0.339646
Target:  5'- uGCCCAgCGGGGAUCGg--GGC-CUGCg -3'
miRNA:   3'- -CGGGUaGCCCCUGGCgaaCUGuGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.