miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23212 5' -58.3 NC_005259.1 + 15976 0.67 0.582304
Target:  5'- cGCCCAguUCGGucgagugaucACCGCcgGugGCCGCa -3'
miRNA:   3'- -CGGGU--AGCCcc--------UGGCGaaCugUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 14562 0.67 0.582304
Target:  5'- gGCCgAgCGGGGACCGgCgaacacCAUCGCg -3'
miRNA:   3'- -CGGgUaGCCCCUGGC-Gaacu--GUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 59354 0.67 0.582304
Target:  5'- -gUCGUCGguGGGAUCGCUcuUGcgaauACGCCGCa -3'
miRNA:   3'- cgGGUAGC--CCCUGGCGA--AC-----UGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 15368 0.67 0.561528
Target:  5'- cGCCgAUCuGGGcgagcuGCCGCaaccGugGCCGCg -3'
miRNA:   3'- -CGGgUAGcCCC------UGGCGaa--CugUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 8749 0.68 0.54096
Target:  5'- aGCCCGUCGaGGucgaGGCC-CUUGGcCAgCGCg -3'
miRNA:   3'- -CGGGUAGC-CC----CUGGcGAACU-GUgGCG- -5'
23212 5' -58.3 NC_005259.1 + 14335 0.68 0.54096
Target:  5'- cGCCCG-CGuGcGGGCCGCc-GACGCCa- -3'
miRNA:   3'- -CGGGUaGC-C-CCUGGCGaaCUGUGGcg -5'
23212 5' -58.3 NC_005259.1 + 50700 0.68 0.539938
Target:  5'- uGCUCGUCGucgcgcuugagccGGGugCugGCUUGACACaGCg -3'
miRNA:   3'- -CGGGUAGC-------------CCCugG--CGAACUGUGgCG- -5'
23212 5' -58.3 NC_005259.1 + 45380 0.68 0.538916
Target:  5'- uGCCCGaggaauuucUCGGGGucGCCGCcgagcgcgcugaUGGCcGCCGCc -3'
miRNA:   3'- -CGGGU---------AGCCCC--UGGCGa-----------ACUG-UGGCG- -5'
23212 5' -58.3 NC_005259.1 + 45749 0.68 0.537896
Target:  5'- cGCaCCGccUCGGGGaugagcacgcccucGCCGggUGccaGCACCGCg -3'
miRNA:   3'- -CG-GGU--AGCCCC--------------UGGCgaAC---UGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 15576 0.68 0.53077
Target:  5'- aCCC-UCGGGG-CCaGCgcGACggGCCGCa -3'
miRNA:   3'- cGGGuAGCCCCuGG-CGaaCUG--UGGCG- -5'
23212 5' -58.3 NC_005259.1 + 58685 0.68 0.510607
Target:  5'- uUCCAUCGcGGGGuCgGCUcGuCGCCGCc -3'
miRNA:   3'- cGGGUAGC-CCCU-GgCGAaCuGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 13335 0.68 0.510607
Target:  5'- aCCCA-CGGcgGGACCGCcc--CGCCGCa -3'
miRNA:   3'- cGGGUaGCC--CCUGGCGaacuGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 21676 0.68 0.509607
Target:  5'- aGCCCAUgaagCGGGGAgggauCCGUUUcgaggacgggucaGACgACCGCc -3'
miRNA:   3'- -CGGGUA----GCCCCU-----GGCGAA-------------CUG-UGGCG- -5'
23212 5' -58.3 NC_005259.1 + 11861 0.68 0.500645
Target:  5'- aCCCGUCGGcgaacguGACCGCc--GCACCGUc -3'
miRNA:   3'- cGGGUAGCCc------CUGGCGaacUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 14290 0.68 0.500645
Target:  5'- uGCCCAaccaccgaugUCGGugcguauGGCCGCccucGACGCCGCc -3'
miRNA:   3'- -CGGGU----------AGCCc------CUGGCGaa--CUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 7424 0.68 0.489788
Target:  5'- -gCCGUCGGcGGugcccgcGCCGCaUGGCAgCGCc -3'
miRNA:   3'- cgGGUAGCC-CC-------UGGCGaACUGUgGCG- -5'
23212 5' -58.3 NC_005259.1 + 57127 0.69 0.480987
Target:  5'- cGCCCAUCGgcGGGACCGagcaguagUGGCccucccacguGCCGa -3'
miRNA:   3'- -CGGGUAGC--CCCUGGCga------ACUG----------UGGCg -5'
23212 5' -58.3 NC_005259.1 + 50653 0.69 0.480987
Target:  5'- cGCCC-UCGGGG-CCauagGGCACCaGCg -3'
miRNA:   3'- -CGGGuAGCCCCuGGcgaaCUGUGG-CG- -5'
23212 5' -58.3 NC_005259.1 + 46347 0.69 0.480987
Target:  5'- cGCUUGUaGGuucuGGGCCGCgaUGGCACCGCc -3'
miRNA:   3'- -CGGGUAgCC----CCUGGCGa-ACUGUGGCG- -5'
23212 5' -58.3 NC_005259.1 + 22182 0.69 0.480987
Target:  5'- cGCCCAUCGuGGuugcGACCuuGCagacgUUGGcCACCGCg -3'
miRNA:   3'- -CGGGUAGC-CC----CUGG--CG-----AACU-GUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.