miRNA display CGI


Results 1 - 20 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23213 3' -60.3 NC_005259.1 + 26435 0.66 0.517627
Target:  5'- -cGCaCCGCCGAGCgggCGGGCcgguGGGCc- -3'
miRNA:   3'- gcCG-GGCGGCUCGa--GUUCGu---CUCGuc -5'
23213 3' -60.3 NC_005259.1 + 7779 0.66 0.517627
Target:  5'- --cCCCGCCGAGCgccCcGGCGGGGUu- -3'
miRNA:   3'- gccGGGCGGCUCGa--GuUCGUCUCGuc -5'
23213 3' -60.3 NC_005259.1 + 7025 0.66 0.517627
Target:  5'- --cCCCGCCGAGCgccCcGGCGGGGUu- -3'
miRNA:   3'- gccGGGCGGCUCGa--GuUCGUCUCGuc -5'
23213 3' -60.3 NC_005259.1 + 51848 0.66 0.517627
Target:  5'- uCGGCCacucgaaaGUcaCGAGCUCAGGCuaccgcGAGguGg -3'
miRNA:   3'- -GCCGGg-------CG--GCUCGAGUUCGu-----CUCguC- -5'
23213 3' -60.3 NC_005259.1 + 59000 0.66 0.516616
Target:  5'- uGGCCuuuucacCGuuGAGCUCAucgaccucAG-AGAGCAGa -3'
miRNA:   3'- gCCGG-------GCggCUCGAGU--------UCgUCUCGUC- -5'
23213 3' -60.3 NC_005259.1 + 60582 0.66 0.515606
Target:  5'- gCGGCCCacggcgaGUCGGGUgccgucaUCGAGCAGcacaGGCGGc -3'
miRNA:   3'- -GCCGGG-------CGGCUCG-------AGUUCGUC----UCGUC- -5'
23213 3' -60.3 NC_005259.1 + 1423 0.66 0.477879
Target:  5'- aCGGCauaCGUCGuGCUCGGGCuG-GCAc -3'
miRNA:   3'- -GCCGg--GCGGCuCGAGUUCGuCuCGUc -5'
23213 3' -60.3 NC_005259.1 + 52619 0.66 0.472045
Target:  5'- uGGCCaacuaCGUCGAGCUgcgucggcuguggggCGAGguGAGCGa -3'
miRNA:   3'- gCCGG-----GCGGCUCGA---------------GUUCguCUCGUc -5'
23213 3' -60.3 NC_005259.1 + 62831 0.66 0.468176
Target:  5'- -uGCCCG-CGAGgUCGAGCGcgcgguugacGAGCAGc -3'
miRNA:   3'- gcCGGGCgGCUCgAGUUCGU----------CUCGUC- -5'
23213 3' -60.3 NC_005259.1 + 41646 0.66 0.468176
Target:  5'- cCGGUCUGCgGGcGCUC--GguGAGCGGg -3'
miRNA:   3'- -GCCGGGCGgCU-CGAGuuCguCUCGUC- -5'
23213 3' -60.3 NC_005259.1 + 43781 0.66 0.458576
Target:  5'- --aCUCGCCGGGCaUGAGCAGcGCGGg -3'
miRNA:   3'- gccGGGCGGCUCGaGUUCGUCuCGUC- -5'
23213 3' -60.3 NC_005259.1 + 53543 0.67 0.449081
Target:  5'- gGuGCCCGgUGucGGCUCGGGCGGuGCGa -3'
miRNA:   3'- gC-CGGGCgGC--UCGAGUUCGUCuCGUc -5'
23213 3' -60.3 NC_005259.1 + 37301 0.67 0.449081
Target:  5'- gGuGCCCGCCGGG-UCA-GCAGA-CAGc -3'
miRNA:   3'- gC-CGGGCGGCUCgAGUuCGUCUcGUC- -5'
23213 3' -60.3 NC_005259.1 + 33100 0.67 0.439696
Target:  5'- aGGCCCG-CGAGCgugCcuGUAGGGCc- -3'
miRNA:   3'- gCCGGGCgGCUCGa--GuuCGUCUCGuc -5'
23213 3' -60.3 NC_005259.1 + 65170 0.67 0.434119
Target:  5'- uGGCCCGCCGGGUcaaggcgcuggucgaUCAGauccGguGGGUAu -3'
miRNA:   3'- gCCGGGCGGCUCG---------------AGUU----CguCUCGUc -5'
23213 3' -60.3 NC_005259.1 + 14980 0.67 0.430424
Target:  5'- aGG-CCGCCGGGUaCAAGaCAcAGCAGg -3'
miRNA:   3'- gCCgGGCGGCUCGaGUUC-GUcUCGUC- -5'
23213 3' -60.3 NC_005259.1 + 66917 0.67 0.430424
Target:  5'- cCGGCagCGCgCGGuGCUCGaccgGGguGAGCGGg -3'
miRNA:   3'- -GCCGg-GCG-GCU-CGAGU----UCguCUCGUC- -5'
23213 3' -60.3 NC_005259.1 + 60056 0.67 0.403312
Target:  5'- gGGUCUuCuCGGGCUCAGGCucGGGCGGc -3'
miRNA:   3'- gCCGGGcG-GCUCGAGUUCGu-CUCGUC- -5'
23213 3' -60.3 NC_005259.1 + 43222 0.68 0.394518
Target:  5'- uGaCCCGCCGAGCUgaUGAGC-GAGCuGa -3'
miRNA:   3'- gCcGGGCGGCUCGA--GUUCGuCUCGuC- -5'
23213 3' -60.3 NC_005259.1 + 2124 0.68 0.368892
Target:  5'- -cGCUCGCCGAGgUCAcGCAGAcccGCAc -3'
miRNA:   3'- gcCGGGCGGCUCgAGUuCGUCU---CGUc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.