Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23213 | 3' | -60.3 | NC_005259.1 | + | 26435 | 0.66 | 0.517627 |
Target: 5'- -cGCaCCGCCGAGCgggCGGGCcgguGGGCc- -3' miRNA: 3'- gcCG-GGCGGCUCGa--GUUCGu---CUCGuc -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 7779 | 0.66 | 0.517627 |
Target: 5'- --cCCCGCCGAGCgccCcGGCGGGGUu- -3' miRNA: 3'- gccGGGCGGCUCGa--GuUCGUCUCGuc -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 7025 | 0.66 | 0.517627 |
Target: 5'- --cCCCGCCGAGCgccCcGGCGGGGUu- -3' miRNA: 3'- gccGGGCGGCUCGa--GuUCGUCUCGuc -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 51848 | 0.66 | 0.517627 |
Target: 5'- uCGGCCacucgaaaGUcaCGAGCUCAGGCuaccgcGAGguGg -3' miRNA: 3'- -GCCGGg-------CG--GCUCGAGUUCGu-----CUCguC- -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 59000 | 0.66 | 0.516616 |
Target: 5'- uGGCCuuuucacCGuuGAGCUCAucgaccucAG-AGAGCAGa -3' miRNA: 3'- gCCGG-------GCggCUCGAGU--------UCgUCUCGUC- -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 60582 | 0.66 | 0.515606 |
Target: 5'- gCGGCCCacggcgaGUCGGGUgccgucaUCGAGCAGcacaGGCGGc -3' miRNA: 3'- -GCCGGG-------CGGCUCG-------AGUUCGUC----UCGUC- -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 1423 | 0.66 | 0.477879 |
Target: 5'- aCGGCauaCGUCGuGCUCGGGCuG-GCAc -3' miRNA: 3'- -GCCGg--GCGGCuCGAGUUCGuCuCGUc -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 52619 | 0.66 | 0.472045 |
Target: 5'- uGGCCaacuaCGUCGAGCUgcgucggcuguggggCGAGguGAGCGa -3' miRNA: 3'- gCCGG-----GCGGCUCGA---------------GUUCguCUCGUc -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 62831 | 0.66 | 0.468176 |
Target: 5'- -uGCCCG-CGAGgUCGAGCGcgcgguugacGAGCAGc -3' miRNA: 3'- gcCGGGCgGCUCgAGUUCGU----------CUCGUC- -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 41646 | 0.66 | 0.468176 |
Target: 5'- cCGGUCUGCgGGcGCUC--GguGAGCGGg -3' miRNA: 3'- -GCCGGGCGgCU-CGAGuuCguCUCGUC- -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 43781 | 0.66 | 0.458576 |
Target: 5'- --aCUCGCCGGGCaUGAGCAGcGCGGg -3' miRNA: 3'- gccGGGCGGCUCGaGUUCGUCuCGUC- -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 53543 | 0.67 | 0.449081 |
Target: 5'- gGuGCCCGgUGucGGCUCGGGCGGuGCGa -3' miRNA: 3'- gC-CGGGCgGC--UCGAGUUCGUCuCGUc -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 37301 | 0.67 | 0.449081 |
Target: 5'- gGuGCCCGCCGGG-UCA-GCAGA-CAGc -3' miRNA: 3'- gC-CGGGCGGCUCgAGUuCGUCUcGUC- -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 33100 | 0.67 | 0.439696 |
Target: 5'- aGGCCCG-CGAGCgugCcuGUAGGGCc- -3' miRNA: 3'- gCCGGGCgGCUCGa--GuuCGUCUCGuc -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 65170 | 0.67 | 0.434119 |
Target: 5'- uGGCCCGCCGGGUcaaggcgcuggucgaUCAGauccGguGGGUAu -3' miRNA: 3'- gCCGGGCGGCUCG---------------AGUU----CguCUCGUc -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 14980 | 0.67 | 0.430424 |
Target: 5'- aGG-CCGCCGGGUaCAAGaCAcAGCAGg -3' miRNA: 3'- gCCgGGCGGCUCGaGUUC-GUcUCGUC- -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 66917 | 0.67 | 0.430424 |
Target: 5'- cCGGCagCGCgCGGuGCUCGaccgGGguGAGCGGg -3' miRNA: 3'- -GCCGg-GCG-GCU-CGAGU----UCguCUCGUC- -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 60056 | 0.67 | 0.403312 |
Target: 5'- gGGUCUuCuCGGGCUCAGGCucGGGCGGc -3' miRNA: 3'- gCCGGGcG-GCUCGAGUUCGu-CUCGUC- -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 43222 | 0.68 | 0.394518 |
Target: 5'- uGaCCCGCCGAGCUgaUGAGC-GAGCuGa -3' miRNA: 3'- gCcGGGCGGCUCGA--GUUCGuCUCGuC- -5' |
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23213 | 3' | -60.3 | NC_005259.1 | + | 2124 | 0.68 | 0.368892 |
Target: 5'- -cGCUCGCCGAGgUCAcGCAGAcccGCAc -3' miRNA: 3'- gcCGGGCGGCUCgAGUuCGUCU---CGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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