miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23213 3' -60.3 NC_005259.1 + 43024 0.68 0.352454
Target:  5'- cCGGCgaugCCGCCGAGC--AGGCcgccGAGCAGc -3'
miRNA:   3'- -GCCG----GGCGGCUCGagUUCGu---CUCGUC- -5'
23213 3' -60.3 NC_005259.1 + 43222 0.68 0.394518
Target:  5'- uGaCCCGCCGAGCUgaUGAGC-GAGCuGa -3'
miRNA:   3'- gCcGGGCGGCUCGA--GUUCGuCUCGuC- -5'
23213 3' -60.3 NC_005259.1 + 43735 0.7 0.269517
Target:  5'- gCGGCcaugCCGCCGAGC-CGGGCAacaucggaaguguuGAGCAc -3'
miRNA:   3'- -GCCG----GGCGGCUCGaGUUCGU--------------CUCGUc -5'
23213 3' -60.3 NC_005259.1 + 43781 0.66 0.458576
Target:  5'- --aCUCGCCGGGCaUGAGCAGcGCGGg -3'
miRNA:   3'- gccGGGCGGCUCGaGUUCGUCuCGUC- -5'
23213 3' -60.3 NC_005259.1 + 45624 0.75 0.135653
Target:  5'- -uGCCCGCCGGGC-CGGGCAGcGCGc -3'
miRNA:   3'- gcCGGGCGGCUCGaGUUCGUCuCGUc -5'
23213 3' -60.3 NC_005259.1 + 46781 0.69 0.321158
Target:  5'- cCGcGCCCGCCGGGCcgaacacCGAGCcugcGAGCGc -3'
miRNA:   3'- -GC-CGGGCGGCUCGa------GUUCGu---CUCGUc -5'
23213 3' -60.3 NC_005259.1 + 50399 0.72 0.215309
Target:  5'- gCGGCUCGCCGAGCgCGccggugccuugaccGGCucGGGCAGc -3'
miRNA:   3'- -GCCGGGCGGCUCGaGU--------------UCGu-CUCGUC- -5'
23213 3' -60.3 NC_005259.1 + 51805 0.78 0.083229
Target:  5'- gGGUCgGUC-AGCUCAGGCAGGGCGGg -3'
miRNA:   3'- gCCGGgCGGcUCGAGUUCGUCUCGUC- -5'
23213 3' -60.3 NC_005259.1 + 51848 0.66 0.517627
Target:  5'- uCGGCCacucgaaaGUcaCGAGCUCAGGCuaccgcGAGguGg -3'
miRNA:   3'- -GCCGGg-------CG--GCUCGAGUUCGu-----CUCguC- -5'
23213 3' -60.3 NC_005259.1 + 52619 0.66 0.472045
Target:  5'- uGGCCaacuaCGUCGAGCUgcgucggcuguggggCGAGguGAGCGa -3'
miRNA:   3'- gCCGG-----GCGGCUCGA---------------GUUCguCUCGUc -5'
23213 3' -60.3 NC_005259.1 + 53543 0.67 0.449081
Target:  5'- gGuGCCCGgUGucGGCUCGGGCGGuGCGa -3'
miRNA:   3'- gC-CGGGCgGC--UCGAGUUCGUCuCGUc -5'
23213 3' -60.3 NC_005259.1 + 56415 1.07 0.000506
Target:  5'- cCGGCCCGCCGAGCUCAAGCAGAGCAGc -3'
miRNA:   3'- -GCCGGGCGGCUCGAGUUCGUCUCGUC- -5'
23213 3' -60.3 NC_005259.1 + 59000 0.66 0.516616
Target:  5'- uGGCCuuuucacCGuuGAGCUCAucgaccucAG-AGAGCAGa -3'
miRNA:   3'- gCCGG-------GCggCUCGAGU--------UCgUCUCGUC- -5'
23213 3' -60.3 NC_005259.1 + 60056 0.67 0.403312
Target:  5'- gGGUCUuCuCGGGCUCAGGCucGGGCGGc -3'
miRNA:   3'- gCCGGGcG-GCUCGAGUUCGu-CUCGUC- -5'
23213 3' -60.3 NC_005259.1 + 60582 0.66 0.515606
Target:  5'- gCGGCCCacggcgaGUCGGGUgccgucaUCGAGCAGcacaGGCGGc -3'
miRNA:   3'- -GCCGGG-------CGGCUCG-------AGUUCGUC----UCGUC- -5'
23213 3' -60.3 NC_005259.1 + 60732 0.68 0.352454
Target:  5'- cCGGCCCGUguCGGGgUCcauuuGCAGuGCAGu -3'
miRNA:   3'- -GCCGGGCG--GCUCgAGuu---CGUCuCGUC- -5'
23213 3' -60.3 NC_005259.1 + 62831 0.66 0.468176
Target:  5'- -uGCCCG-CGAGgUCGAGCGcgcgguugacGAGCAGc -3'
miRNA:   3'- gcCGGGCgGCUCgAGUUCGU----------CUCGUC- -5'
23213 3' -60.3 NC_005259.1 + 63394 0.7 0.267544
Target:  5'- uGGCCCacGCCGAccaaugguugcccuuGCUCAuGCcGAGCAGc -3'
miRNA:   3'- gCCGGG--CGGCU---------------CGAGUuCGuCUCGUC- -5'
23213 3' -60.3 NC_005259.1 + 65170 0.67 0.434119
Target:  5'- uGGCCCGCCGGGUcaaggcgcuggucgaUCAGauccGguGGGUAu -3'
miRNA:   3'- gCCGGGCGGCUCG---------------AGUU----CguCUCGUc -5'
23213 3' -60.3 NC_005259.1 + 65688 0.71 0.246001
Target:  5'- uCGGCCCGaCGAGCg--GGCcGAGUAGg -3'
miRNA:   3'- -GCCGGGCgGCUCGaguUCGuCUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.