miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23213 5' -55.4 NC_005259.1 + 63335 0.66 0.707429
Target:  5'- cGCCugGCAGaUCAGGuccaUGACGGGc -3'
miRNA:   3'- cCGGugCGUCgAGUCCca--ACUGCUUu -5'
23213 5' -55.4 NC_005259.1 + 26038 0.67 0.685868
Target:  5'- uGGCCA-GCAGCgccgCcGGGUUGGCc--- -3'
miRNA:   3'- -CCGGUgCGUCGa---GuCCCAACUGcuuu -5'
23213 5' -55.4 NC_005259.1 + 43042 0.67 0.664102
Target:  5'- aGGCCGCcgaGCAGCgaaccgaCGGGGUcggUGAgGAAc -3'
miRNA:   3'- -CCGGUG---CGUCGa------GUCCCA---ACUgCUUu -5'
23213 5' -55.4 NC_005259.1 + 29948 0.67 0.664102
Target:  5'- cGGCCcgguCGCGGCUggUGGGGcgGGCGGu- -3'
miRNA:   3'- -CCGGu---GCGUCGA--GUCCCaaCUGCUuu -5'
23213 5' -55.4 NC_005259.1 + 63068 0.68 0.642217
Target:  5'- cGCgAUG-AGCUCAGGGUucuuggUGACGAc- -3'
miRNA:   3'- cCGgUGCgUCGAGUCCCA------ACUGCUuu -5'
23213 5' -55.4 NC_005259.1 + 45743 0.68 0.631256
Target:  5'- aGGCCGCGCAccGcCUCGGGGaUGAg---- -3'
miRNA:   3'- -CCGGUGCGU--C-GAGUCCCaACUgcuuu -5'
23213 5' -55.4 NC_005259.1 + 41389 0.68 0.631256
Target:  5'- uGGCCgguacccauggcGCGCcGCUCGGGGUgcccACGAu- -3'
miRNA:   3'- -CCGG------------UGCGuCGAGUCCCAac--UGCUuu -5'
23213 5' -55.4 NC_005259.1 + 31927 0.68 0.587514
Target:  5'- cGUCACGCA-CUCGGGGUcgaGGCGGu- -3'
miRNA:   3'- cCGGUGCGUcGAGUCCCAa--CUGCUuu -5'
23213 5' -55.4 NC_005259.1 + 56908 0.69 0.575565
Target:  5'- uGGCCGcCGCAGCaggcgugcccgcgUCGGugagcaugcGGUUGGCGAAc -3'
miRNA:   3'- -CCGGU-GCGUCG-------------AGUC---------CCAACUGCUUu -5'
23213 5' -55.4 NC_005259.1 + 41223 0.69 0.555063
Target:  5'- cGUCACGCccuGCUCGGcGG-UGACGAu- -3'
miRNA:   3'- cCGGUGCGu--CGAGUC-CCaACUGCUuu -5'
23213 5' -55.4 NC_005259.1 + 33328 0.7 0.512676
Target:  5'- cGGUCACGCGGaagugaUCGGGGUcgaugcaaucgGGCGAGGu -3'
miRNA:   3'- -CCGGUGCGUCg-----AGUCCCAa----------CUGCUUU- -5'
23213 5' -55.4 NC_005259.1 + 62155 0.72 0.404246
Target:  5'- aGGCCGCaGCAcCUCGGGGUgcGCGAu- -3'
miRNA:   3'- -CCGGUG-CGUcGAGUCCCAacUGCUuu -5'
23213 5' -55.4 NC_005259.1 + 42663 0.74 0.303871
Target:  5'- cGGCCACGCGGCUgCu--GUUGGCGAu- -3'
miRNA:   3'- -CCGGUGCGUCGA-GuccCAACUGCUuu -5'
23213 5' -55.4 NC_005259.1 + 56450 1.08 0.001336
Target:  5'- gGGCCACGCAGCUCAGGGUUGACGAAAu -3'
miRNA:   3'- -CCGGUGCGUCGAGUCCCAACUGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.