Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23214 | 5' | -52.3 | NC_005259.1 | + | 55478 | 1.09 | 0.002587 |
Target: 5'- uGUACGCGUAGAUGAGCGCGAACACCAg -3' miRNA: 3'- -CAUGCGCAUCUACUCGCGCUUGUGGU- -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 47058 | 0.78 | 0.270065 |
Target: 5'- -aGCGUGUuGGUGAGCgagGCGAGCGCCGa -3' miRNA: 3'- caUGCGCAuCUACUCG---CGCUUGUGGU- -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 66924 | 0.74 | 0.447573 |
Target: 5'- -cGCGCGgugcucgaccgGGGUGAGCG-GGACACCGg -3' miRNA: 3'- caUGCGCa----------UCUACUCGCgCUUGUGGU- -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 8267 | 0.73 | 0.498487 |
Target: 5'- -cGCGaCGUAGGUGuuguaccggguGCGCGGGCACCc -3' miRNA: 3'- caUGC-GCAUCUACu----------CGCGCUUGUGGu -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 36287 | 0.73 | 0.551826 |
Target: 5'- -aGCGCGauuuucuUGAGCGCGAGCGCUu -3' miRNA: 3'- caUGCGCaucu---ACUCGCGCUUGUGGu -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 17207 | 0.72 | 0.606763 |
Target: 5'- -gGCGgGUAGAcgggacUGGGCGCGAGucaaauCGCCAg -3' miRNA: 3'- caUGCgCAUCU------ACUCGCGCUU------GUGGU- -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 34687 | 0.71 | 0.644502 |
Target: 5'- aUugGCGcugcGGAUGAugccgaccaucugccGCGCGAGCGCCu -3' miRNA: 3'- cAugCGCa---UCUACU---------------CGCGCUUGUGGu -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 34113 | 0.71 | 0.65116 |
Target: 5'- -aACGUGUcGccGGGCGCGAGCACg- -3' miRNA: 3'- caUGCGCAuCuaCUCGCGCUUGUGgu -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 26363 | 0.7 | 0.716991 |
Target: 5'- cUGCGCGUAGAUGucGGUgGCGAGC-CUg -3' miRNA: 3'- cAUGCGCAUCUAC--UCG-CGCUUGuGGu -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 43949 | 0.69 | 0.779739 |
Target: 5'- -aGCGuCGgcGAUGGGCGgGGcCGCCGc -3' miRNA: 3'- caUGC-GCauCUACUCGCgCUuGUGGU- -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 30900 | 0.69 | 0.759322 |
Target: 5'- -aACGCG-AGGugugccgguUGAGCGUGAGCagGCCAu -3' miRNA: 3'- caUGCGCaUCU---------ACUCGCGCUUG--UGGU- -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 57078 | 0.69 | 0.759322 |
Target: 5'- -aACGCGUcgaGGAUGucGgGuCGAGCGCCAu -3' miRNA: 3'- caUGCGCA---UCUACu-CgC-GCUUGUGGU- -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 52649 | 0.69 | 0.759322 |
Target: 5'- -gGgGCG-AGGUGAGCGaCGAGCAUUg -3' miRNA: 3'- caUgCGCaUCUACUCGC-GCUUGUGGu -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 41894 | 0.69 | 0.748908 |
Target: 5'- aUACGCaugcgGGAUGAGCGCGGGaGCUc -3' miRNA: 3'- cAUGCGca---UCUACUCGCGCUUgUGGu -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 21160 | 0.68 | 0.786742 |
Target: 5'- cUACGuCGUcaccgacggcagucGGGUcaucGGCGCGAGCACCAa -3' miRNA: 3'- cAUGC-GCA--------------UCUAc---UCGCGCUUGUGGU- -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 10774 | 0.68 | 0.799533 |
Target: 5'- -gGCGgGUcaucgAGGUGGGcCGCGAGCGCa- -3' miRNA: 3'- caUGCgCA-----UCUACUC-GCGCUUGUGgu -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 41656 | 0.68 | 0.799533 |
Target: 5'- -gGCGCuc-GGUGAGCGgGAucuGCACCGc -3' miRNA: 3'- caUGCGcauCUACUCGCgCU---UGUGGU- -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 4345 | 0.67 | 0.862659 |
Target: 5'- cGU-CGCGguGAUGAGCGCcGGACGgCAc -3' miRNA: 3'- -CAuGCGCauCUACUCGCG-CUUGUgGU- -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 33735 | 0.67 | 0.862659 |
Target: 5'- uGU-CGCGUGGAgcggugugcacGAGCaCGAACACCc -3' miRNA: 3'- -CAuGCGCAUCUa----------CUCGcGCUUGUGGu -5' |
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23214 | 5' | -52.3 | NC_005259.1 | + | 3119 | 0.67 | 0.870767 |
Target: 5'- uUGCGCGgcaccGUGGGCaGCGGacgGCACCGc -3' miRNA: 3'- cAUGCGCauc--UACUCG-CGCU---UGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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