miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23216 5' -56.2 NC_005259.1 + 51822 0.66 0.693402
Target:  5'- cAGGGCgggCAg--ACCCGCCCgGUUg-- -3'
miRNA:   3'- -UCUCGa--GUacaUGGGCGGGgCAGaaa -5'
23216 5' -56.2 NC_005259.1 + 6055 0.66 0.692324
Target:  5'- cGAGCUCGUGUGCgcggugaUCGCCgCCGa---- -3'
miRNA:   3'- uCUCGAGUACAUG-------GGCGG-GGCagaaa -5'
23216 5' -56.2 NC_005259.1 + 25940 0.67 0.64997
Target:  5'- uGAGCgcacgCcgGUGCCCGgCCCGcCg-- -3'
miRNA:   3'- uCUCGa----GuaCAUGGGCgGGGCaGaaa -5'
23216 5' -56.2 NC_005259.1 + 36711 0.67 0.628116
Target:  5'- uGAGCUCGUGccgcucgACCCGCCgCGcCc-- -3'
miRNA:   3'- uCUCGAGUACa------UGGGCGGgGCaGaaa -5'
23216 5' -56.2 NC_005259.1 + 67172 0.67 0.606275
Target:  5'- -cGGC-CAUGccgccgaugaUGCCCGCCUCGUCUc- -3'
miRNA:   3'- ucUCGaGUAC----------AUGGGCGGGGCAGAaa -5'
23216 5' -56.2 NC_005259.1 + 57632 0.67 0.601915
Target:  5'- cGAGCggaacCAUGUGCCCGCCggguacagcagcaCGUCg-- -3'
miRNA:   3'- uCUCGa----GUACAUGGGCGGg------------GCAGaaa -5'
23216 5' -56.2 NC_005259.1 + 42980 0.67 0.595383
Target:  5'- cGGGGaUCAUcGUugCCGCCCCGcCg-- -3'
miRNA:   3'- -UCUCgAGUA-CAugGGCGGGGCaGaaa -5'
23216 5' -56.2 NC_005259.1 + 20800 0.68 0.5737
Target:  5'- aAGAGC-CAccUGCUCGUCCCGUCg-- -3'
miRNA:   3'- -UCUCGaGUacAUGGGCGGGGCAGaaa -5'
23216 5' -56.2 NC_005259.1 + 31751 0.69 0.520448
Target:  5'- gAGcGCUgGUGUccccaCCGCCCCGUCa-- -3'
miRNA:   3'- -UCuCGAgUACAug---GGCGGGGCAGaaa -5'
23216 5' -56.2 NC_005259.1 + 40141 0.75 0.238461
Target:  5'- cGAGCUCGccgucgguugucgGUGCCCGCCCCGgcagCUc- -3'
miRNA:   3'- uCUCGAGUa------------CAUGGGCGGGGCa---GAaa -5'
23216 5' -56.2 NC_005259.1 + 54926 1.06 0.00152
Target:  5'- cAGAGCUCAUGUACCCGCCCCGUCUUUg -3'
miRNA:   3'- -UCUCGAGUACAUGGGCGGGGCAGAAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.