miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23217 5' -51.8 NC_005259.1 + 847 0.66 0.919199
Target:  5'- gGUCGCUG-CgCAGGCCgagUGCgagcGUGCg -3'
miRNA:   3'- -CGGCGGCuGgGUUUGGa--ACGaa--UACG- -5'
23217 5' -51.8 NC_005259.1 + 3005 0.66 0.919199
Target:  5'- cGCCGCCGACgCCAucACCccagcGCUccAUGa -3'
miRNA:   3'- -CGGCGGCUG-GGUu-UGGaa---CGAa-UACg -5'
23217 5' -51.8 NC_005259.1 + 3911 0.67 0.877382
Target:  5'- uGCUGCCGuACCUGAACCccgGCgagaccGUGUc -3'
miRNA:   3'- -CGGCGGC-UGGGUUUGGaa-CGaa----UACG- -5'
23217 5' -51.8 NC_005259.1 + 5355 0.68 0.852927
Target:  5'- cGCaugaGCCGACCUAucgcGCCggGCaaGUGCc -3'
miRNA:   3'- -CGg---CGGCUGGGUu---UGGaaCGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 6270 0.67 0.877382
Target:  5'- cGCCGCCGcGCCU--ACCUcGUggucgagugGUGCg -3'
miRNA:   3'- -CGGCGGC-UGGGuuUGGAaCGaa-------UACG- -5'
23217 5' -51.8 NC_005259.1 + 6499 0.67 0.869479
Target:  5'- aCUGCUGGCCCAcaucGACCgacGCc-GUGCg -3'
miRNA:   3'- cGGCGGCUGGGU----UUGGaa-CGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 6931 0.66 0.912918
Target:  5'- cGCCGCCG-CCUugAGGCCgaGCUc--GCc -3'
miRNA:   3'- -CGGCGGCuGGG--UUUGGaaCGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 7862 0.72 0.626974
Target:  5'- -gCGCCGACCCcgguGGCCcgagUGCUUGgacucggGCa -3'
miRNA:   3'- cgGCGGCUGGGu---UUGGa---ACGAAUa------CG- -5'
23217 5' -51.8 NC_005259.1 + 8065 0.69 0.778044
Target:  5'- cGCCGCCGACaUCGAgaucguGCCgcGCUg--GCg -3'
miRNA:   3'- -CGGCGGCUG-GGUU------UGGaaCGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 9248 0.67 0.882
Target:  5'- gGCCGCaguaGcGCCCGAACCggucccgaaacgGCgaguUAUGCg -3'
miRNA:   3'- -CGGCGg---C-UGGGUUUGGaa----------CGa---AUACG- -5'
23217 5' -51.8 NC_005259.1 + 9551 0.7 0.73656
Target:  5'- aGCUGcCCGGCCUcGACCgcgucgGCgagGUGCu -3'
miRNA:   3'- -CGGC-GGCUGGGuUUGGaa----CGaa-UACG- -5'
23217 5' -51.8 NC_005259.1 + 12291 0.7 0.757564
Target:  5'- cGCCGCCGcGCCuCGAugCggGCaaugucgGUGCg -3'
miRNA:   3'- -CGGCGGC-UGG-GUUugGaaCGaa-----UACG- -5'
23217 5' -51.8 NC_005259.1 + 13098 0.67 0.877382
Target:  5'- uGCCaCCGACCCcGGCCc-GCUcg-GCg -3'
miRNA:   3'- -CGGcGGCUGGGuUUGGaaCGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 13426 0.66 0.919199
Target:  5'- gGUCGCCG-CCgGGGCCgcGCUag-GCg -3'
miRNA:   3'- -CGGCGGCuGGgUUUGGaaCGAauaCG- -5'
23217 5' -51.8 NC_005259.1 + 14284 0.7 0.715128
Target:  5'- aCCGCCuGCCCAAccACCgaUGUcgGUGCg -3'
miRNA:   3'- cGGCGGcUGGGUU--UGGa-ACGaaUACG- -5'
23217 5' -51.8 NC_005259.1 + 14347 0.66 0.930919
Target:  5'- gGCCGCCGACgCCAucAACUcacgUGUcUccGCu -3'
miRNA:   3'- -CGGCGGCUG-GGU--UUGGa---ACGaAuaCG- -5'
23217 5' -51.8 NC_005259.1 + 16431 0.7 0.73656
Target:  5'- cGUCGagCGGCCCAAACCggGCaccgUcgGCa -3'
miRNA:   3'- -CGGCg-GCUGGGUUUGGaaCGa---AuaCG- -5'
23217 5' -51.8 NC_005259.1 + 17671 0.68 0.844294
Target:  5'- cGCCGUCGACUCGccCCgagggUGCcUAUGa -3'
miRNA:   3'- -CGGCGGCUGGGUuuGGa----ACGaAUACg -5'
23217 5' -51.8 NC_005259.1 + 17762 0.72 0.649196
Target:  5'- gGCCGCCGcGCgCCGGGCCgaGCgcaccgagcGUGCg -3'
miRNA:   3'- -CGGCGGC-UG-GGUUUGGaaCGaa-------UACG- -5'
23217 5' -51.8 NC_005259.1 + 18300 0.73 0.571666
Target:  5'- aGCCGCCGuucuGCCCGGugugcgacACCgagGCcgGUGCg -3'
miRNA:   3'- -CGGCGGC----UGGGUU--------UGGaa-CGaaUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.